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PDB: 33 results

7BBQ
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BU of 7bbq by Molmil
Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid. Apo form.
Descriptor: KORA domain-containing protein
Authors:Fernandez-Lopez, R, Boer, D.R, Moncalian, G.
Deposit date:2020-12-18
Release date:2022-07-13
Last modified:2022-12-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of direct and inverted DNA sequence repeat recognition by helix-turn-helix transcription factors.
Nucleic Acids Res., 50, 2022
6T3H
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BU of 6t3h by Molmil
Structure of the Rap conjugation gene regulator of the plasmid pLS20 in apo form
Descriptor: Response regulator aspartate phosphatase
Authors:Crespo, I, Bernardo, N, Meijer, W.J.J, Boer, D.R.
Deposit date:2019-10-11
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.039 Å)
Cite:Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization.
Nucleic Acids Res., 48, 2020
6T46
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BU of 6t46 by Molmil
Structure of the Rap conjugation gene regulator of the plasmid pLS20 in complex with the Phr* peptide
Descriptor: CHLORIDE ION, Quorum-sensing secretion protein (processed), Response regulator aspartate phosphatase, ...
Authors:Crespo, I, Bernardo, N, Meijer, W.J.J, Boer, D.R.
Deposit date:2019-10-12
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization.
Nucleic Acids Res., 48, 2020
4LVK
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BU of 4lvk by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6
Descriptor: ACTTTAT oligonucleotide, ATAAAGTATAGTGTGpo oligonucleotide, MANGANESE (II) ION, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4LVM
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BU of 4lvm by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5
Descriptor: ACTTTAT oligonucleotide, ATAAAGTATAGTGTGT oligonucleotide, CHLORIDE ION, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4LVJ
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BU of 4lvj by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 5.5
Descriptor: ACETATE ION, ACTTTAT oligonucleotide, ATAAAGTATAGTGTG oligonucleotide, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4LVI
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BU of 4lvi by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 4.6
Descriptor: ACTTTAT oligonucleotide, ATAAAGTATAGTGTG oligonucleotide, GLYCEROL, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4LVL
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BU of 4lvl by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8
Descriptor: CHLORIDE ION, DNA (5'-D(*AP*CP*TP*TP*TP*AP*T)-3'), DNA (5'-D(*AP*TP*AP*AP*AP*GP*TP*AP*TP*AP*GP*TP*GP*TP*GP*(TS6))-3'), ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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PDB entries from 2024-08-28

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