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PDB: 114 results

6MP9
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BU of 6mp9 by Molmil
X-ray crystal structure of VioC bound to Fe(II), 2-oxo-5-guanidinopentanoic acid, and succinate
Descriptor: 5-carbamimidamido-2-oxopentanoic acid, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (II) ION, ...
Authors:Dunham, N.P, Boal, A.K.
Deposit date:2018-10-05
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:alpha-Amine Desaturation of d-Arginine by the Iron(II)- and 2-(Oxo)glutarate-Dependent l-Arginine 3-Hydroxylase, VioC.
Biochemistry, 57, 2018
6NPC
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BU of 6npc by Molmil
X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe, 2OG, and 2-trimethylaminoethylphosphonate
Descriptor: 2-OXOGLUTARIC ACID, FE (II) ION, N,N,N-trimethyl-2-phosphonoethan-1-aminium, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
6NPD
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BU of 6npd by Molmil
X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe, 2OG, and (R)-1-hydroxy-2-trimethylaminoethylphosphonate
Descriptor: (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium, FE (II) ION, TmpA, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
6NPA
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BU of 6npa by Molmil
X-ray crystal structure of TmpB, (R)-1-hydroxy-2-trimethylaminoethylphosphonate oxygenase, with (R)-1-hydroxy-2-trimethylaminoethylphosphonate
Descriptor: (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium, FE (II) ION, FE (III) ION, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
6NPB
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BU of 6npb by Molmil
X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe and 2OG
Descriptor: 2-OXOGLUTARIC ACID, FE (II) ION, SULFATE ION, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
6ONP
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BU of 6onp by Molmil
Crystal structure of periplasmic binding protein XoxJ from Methylobacterium extorquens AM1
Descriptor: 1,2-ETHANEDIOL, periplasmic binding protein XoxJ
Authors:Rose, H.R, Taylor, E.M, Boal, A.K.
Deposit date:2019-04-22
Release date:2019-05-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Biochemical and Structural Characterization of XoxG and XoxJ and Their Roles in Lanthanide-Dependent Methanol Dehydrogenase Activity.
Chembiochem, 20, 2019
6ONQ
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BU of 6onq by Molmil
Crystal structure of c-type cytochrome XoxG from Methylobacterium extorquens AM1
Descriptor: Cytochrome c XoxG, HEME C
Authors:McBride, M.J, Featherston, E.R, Boal, A.K.
Deposit date:2019-04-22
Release date:2019-05-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Biochemical and Structural Characterization of XoxG and XoxJ and Their Roles in Lanthanide-Dependent Methanol Dehydrogenase Activity.
Chembiochem, 20, 2019
6XCV
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BU of 6xcv by Molmil
Crystal structure of apo SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697
Descriptor: Cupin domain-containing diiron protein
Authors:McBride, M.J, Boal, A.K.
Deposit date:2020-06-09
Release date:2021-01-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N -nitrosourea-producing enzyme SznF.
Proc.Natl.Acad.Sci.USA, 118, 2021
6VZY
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BU of 6vzy by Molmil
Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 with a diiron(II) central domain cofactor
Descriptor: Cupin domain-containing diiron protein, FE (II) ION
Authors:McBride, M.J, Boal, A.K.
Deposit date:2020-02-28
Release date:2021-01-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N -nitrosourea-producing enzyme SznF.
Proc.Natl.Acad.Sci.USA, 118, 2021
6VP4
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BU of 6vp4 by Molmil
Ethylene forming enzyme (EFE) in complex with Fe(II), L-arginine, and 2OG
Descriptor: 2-OXOGLUTARIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, ...
Authors:Davis, K.M, Copeland, R.A, Boal, A.K.
Deposit date:2020-02-01
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.
J.Am.Chem.Soc., 143, 2021
6VP5
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BU of 6vp5 by Molmil
Ethylene forming enzyme (EFE) D191E variant in complex with Fe(II), L-arginine, and 2OG
Descriptor: 2-OXOGLUTARIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, ...
Authors:Davis, K.M, Copeland, R.A, Boal, A.K.
Deposit date:2020-02-01
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.
J.Am.Chem.Soc., 143, 2021
4N6W
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BU of 4n6w by Molmil
X-Ray Crystal Structure of Citrate-bound PhnZ
Descriptor: CITRATE ANION, FE (III) ION, Predicted HD phosphohydrolase PhnZ
Authors:Worsdorfer, B, Lingaraju, M, Yennawar, N.H, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.E.
Deposit date:2013-10-14
Release date:2013-11-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
6ALN
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BU of 6aln by Molmil
VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and 2OG
Descriptor: (2S,3S)-3-HYDROXYARGININE, 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent L-arginine hydroxylase, ...
Authors:Mitchell, A.J, Dunham, N.P, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
6ALO
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BU of 6alo by Molmil
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and a peroxysuccinate intermediate
Descriptor: 4-peroxy-4-oxobutanoic acid, ARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, ...
Authors:Dunham, N.P, Mitchell, A.J, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
4N71
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BU of 4n71 by Molmil
X-Ray Crystal Structure of 2-amino-1-hydroxyethylphosphonate-bound PhnZ
Descriptor: FE (III) ION, Predicted HD phosphohydrolase PhnZ, [(1R)-2-amino-1-hydroxyethyl]phosphonic acid
Authors:Woersdoerfer, B, Lingaraju, M, Yennawar, N, Boal, A.K, Krebs, C, Bollinger Jr, J.M, Pandelia, M.-E.
Deposit date:2013-10-14
Release date:2013-11-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.984 Å)
Cite:Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA, 110, 2013
6ALM
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BU of 6alm by Molmil
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and 2-OXO-GLUTARIC ACID
Descriptor: 2-OXOGLUTARIC ACID, ARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, ...
Authors:Dunham, N.P, Mitchell, A.J, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
6ALQ
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BU of 6alq by Molmil
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and succinate
Descriptor: ARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (II) ION, ...
Authors:Dunham, N.P, Mitchell, A.J, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
6ALR
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BU of 6alr by Molmil
VioC L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate
Descriptor: ARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, SUCCINIC ACID, ...
Authors:Mitchell, A.J, Dunham, N.P, Bergman, J.A, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
6ALP
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BU of 6alp by Molmil
VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and succinate
Descriptor: (2S,3S)-3-HYDROXYARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (II) ION, ...
Authors:Mitchell, A.J, Dunham, N.P, Boal, A.K.
Deposit date:2017-08-08
Release date:2017-09-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
J. Am. Chem. Soc., 139, 2017
7MMT
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BU of 7mmt by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae with Cu(I) bound (Cu chloride soak)
Descriptor: CHLORIDE ION, COPPER (I) ION, GLYCEROL, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Ribonucleotide Reductase
To be published
7MMV
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BU of 7mmv by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae with Cu(I) bound (Cu sulfate soak)
Descriptor: CHLORIDE ION, COPPER (I) ION, GLYCEROL, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Ribonucleotide Reductas
To be published
7MMP
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BU of 7mmp by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, Protein NrdI, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Ribonucleotide Reductase
To be published
7MMS
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BU of 7mms by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Semiquinone Form with Cu(I) bound
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, CALCIUM ION, COPPER (I) ION, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Ribonucleotide Reductase
To be published
7MMR
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BU of 7mmr by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Oxidized Form with Cu(I) bound
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, COPPER (I) ION, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ribonucleotide Reductase
To be published
7MMQ
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BU of 7mmq by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Reduced Hydroquinone Form
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, Protein NrdI, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ribonucleotide Reductase
To be published

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