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PDB: 148 件
5BQ5
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BU of 5bq5 by Molmil
Crystal structure of the IstB AAA+ domain bound to ADP-BeF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Insertion sequence IS5376 putative ATP-binding protein, ...
著者Arias-Palomo, E, Berger, J.M.
登録日2015-05-28
公開日2015-09-02
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.
Cell, 162, 2015
3PEW
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BU of 3pew by Molmil
S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DBP5, BERYLLIUM TRIFLUORIDE ION, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2010-10-27
公開日2011-03-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export.
Nature, 472, 2011
3PEY
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BU of 3pey by Molmil
S. cerevisiae Dbp5 bound to RNA and ADP BeF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DBP5, BERYLLIUM TRIFLUORIDE ION, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2010-10-27
公開日2011-03-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export.
Nature, 472, 2011
1TOK
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BU of 1tok by Molmil
Maleic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase
分子名称: Aspartate aminotransferase, MALEIC ACID
著者Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
登録日2004-06-14
公開日2004-10-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TOJ
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BU of 1toj by Molmil
Hydrocinnamic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase
分子名称: Aspartate aminotransferase, HYDROCINNAMIC ACID
著者Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
登録日2004-06-14
公開日2004-10-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TOE
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BU of 1toe by Molmil
Unliganded structure of Hexamutant + A293D mutant of E. coli aspartate aminotransferase
分子名称: Aspartate aminotransferase, SULFATE ION
著者Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
登録日2004-06-14
公開日2004-10-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TOG
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BU of 1tog by Molmil
Hydrocinnamic acid-bound structure of SRHEPT + A293D mutant of E. coli aspartate aminotransferase
分子名称: Aspartate aminotransferase, HYDROCINNAMIC ACID
著者Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
登録日2004-06-14
公開日2004-10-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TOI
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BU of 1toi by Molmil
Hydrocinnamic acid-bound structure of Hexamutant + A293D mutant of E. coli aspartate aminotransferase
分子名称: Aspartate aminotransferase, HYDROCINNAMIC ACID
著者Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
登録日2004-06-14
公開日2004-10-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TUE
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BU of 1tue by Molmil
The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2
分子名称: Regulatory protein E2, Replication protein E1
著者Abbate, E.A, Berger, J.M, Botchan, M.R.
登録日2004-06-24
公開日2004-08-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2
Genes Dev., 18, 2004
3RRN
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BU of 3rrn by Molmil
S. cerevisiae dbp5 l327v bound to gle1 h337r and ip6
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DBP5, INOSITOL HEXAKISPHOSPHATE, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2011-04-29
公開日2011-05-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (4.001 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export.
Nature, 472, 2011
1XIP
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BU of 1xip by Molmil
Crystal Structure of the N-terminal Domain of Nup159
分子名称: Nucleoporin NUP159
著者Weirich, C.S, Erzberger, J.P, Berger, J.M, Weis, K.
登録日2004-09-21
公開日2004-12-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The N-Terminal Domain of Nup159 Forms a beta-Propeller that Functions in mRNA Export by Tethering the Helicase Dbp5 to the Nuclear Pore
Mol.Cell, 16, 2004
3RRM
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BU of 3rrm by Molmil
S. cerevisiae dbp5 l327v bound to nup159, gle1 h337r, ip6 and adp
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DBP5, INOSITOL HEXAKISPHOSPHATE, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2011-04-29
公開日2011-05-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export.
Nature, 472, 2011
1T98
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BU of 1t98 by Molmil
Crystal Structure of MukF(1-287)
分子名称: Chromosome partition protein mukF
著者Fennell-Fezzie, R, Berger, J.M.
登録日2004-05-14
公開日2005-05-24
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The MukF subunit of Escherichia coli condensin: architecture and functional relationship to kleisins.
Embo J., 24, 2005
3PEU
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BU of 3peu by Molmil
S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 H337R and IP6
分子名称: ATP-dependent RNA helicase DBP5, GLYCEROL, INOSITOL HEXAKISPHOSPHATE, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2010-10-27
公開日2011-03-23
最終更新日2020-10-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export.
Nature, 472, 2011
3PEV
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BU of 3pev by Molmil
S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 and IP6
分子名称: ATP-dependent RNA helicase DBP5, GLYCEROL, INOSITOL HEXAKISPHOSPHATE, ...
著者Montpetit, B, Thomsen, N.D, Helmke, K.J, Seeliger, M.A, Berger, J.M, Weis, K.
登録日2010-10-27
公開日2011-03-23
最終更新日2020-10-14
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export.
Nature, 472, 2011
3EC2
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BU of 3ec2 by Molmil
Crystal structure of the DnaC helicase loader
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA replication protein DnaC, MAGNESIUM ION
著者Mott, M.L, Erzberger, J.P, Coons, M.M, Berger, J.M.
登録日2008-08-28
公開日2008-11-25
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators.
Cell(Cambridge,Mass.), 135, 2008
1XPU
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BU of 1xpu by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', 5A-(3-FORMYLPHENYLSULFANYL)-DIHYDROBICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2004-11-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
1XPO
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BU of 1xpo by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', BICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2005-02-08
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
1XPR
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BU of 1xpr by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', 5A-FORMYLBICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2004-11-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
1Z5B
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BU of 1z5b by Molmil
Topoisomerase VI-B, ADP AlF4- bound dimer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1Z5C
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BU of 1z5c by Molmil
Topoisomerase VI-B, ADP Pi bound dimer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
3E2L
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BU of 3e2l by Molmil
Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
分子名称: Beta-lactamase inhibitory protein, Carbapenemase
著者Hanes, M.S, Jude, K.M, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
登録日2008-08-05
公開日2009-08-04
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
2Q17
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BU of 2q17 by Molmil
Formylglycine Generating Enzyme from Streptomyces coelicolor
分子名称: CALCIUM ION, formylglycine generating enzyme
著者Carlson, B.L, Ballister, E.R, Skordalakes, E, King, D.S, Breidenbach, M.A, Gilmore, S.A, Berger, J.M, Bertozzi, C.R.
登録日2007-05-23
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Function and structure of a prokaryotic formylglycine-generating enzyme.
J.Biol.Chem., 283, 2008
2A8V
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BU of 2a8v by Molmil
RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX
分子名称: 5'-R(P*CP*CP*C)-3', 5'-R(P*CP*CP*CP*CP*CP*C)-3', RNA BINDING DOMAIN OF RHO TRANSCRIPTION TERMINATION FACTOR
著者Bogden, C.E, Fass, D, Bergman, N, Nichols, M.D, Berger, J.M.
登録日1998-11-08
公開日1999-04-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
3R8F
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BU of 3r8f by Molmil
Replication initiator DnaA bound to AMPPCP and single-stranded DNA
分子名称: 5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3', Chromosomal replication initiator protein dnaA, MAGNESIUM ION, ...
著者Duderstadt, K.E, Chuang, K, Berger, J.M.
登録日2011-03-23
公開日2011-09-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.366 Å)
主引用文献DNA stretching by bacterial initiators promotes replication origin opening.
Nature, 478, 2011

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