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PDB: 305 results

5CUL
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BU of 5cul by Molmil
crystal structure of the PscU C-terminal domain
Descriptor: Translocation protein in type III secretion
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2015-07-24
Release date:2015-12-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Structure of a Type 3 Secretion System (T3SS) Ruler Protein Suggests a Molecular Mechanism for Needle Length Sensing.
J.Biol.Chem., 291, 2016
7TKT
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BU of 7tkt by Molmil
SthK closed state, cAMP-bound in the presence of detergent
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Putative transcriptional regulator, ...
Authors:Rheinberger, J, Schmidpeter, P.A, Nimigean, C.M.
Deposit date:2022-01-17
Release date:2022-10-26
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Anionic lipids unlock the gates of select ion channels in the pacemaker family.
Nat.Struct.Mol.Biol., 29, 2022
5CUK
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BU of 5cuk by Molmil
Crystal structure of the PscP SS domain
Descriptor: GLYCEROL, Ruler protein
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2015-07-24
Release date:2015-12-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Structure of a Type 3 Secretion System (T3SS) Ruler Protein Suggests a Molecular Mechanism for Needle Length Sensing.
J.Biol.Chem., 291, 2016
3BJX
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BU of 3bjx by Molmil
Structure of a Group I haloacid dehalogenase from Pseudomonas putida strain PP3
Descriptor: Halocarboxylic acid dehalogenase DehI, SULFATE ION
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2007-12-05
Release date:2008-04-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism
J.Mol.Biol., 378, 2008
4OYC
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BU of 4oyc by Molmil
Crystal structure of the PrgK periplasmic domain 2
Descriptor: Lipoprotein PrgK
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2014-02-11
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
3J6D
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BU of 3j6d by Molmil
Model of the PrgH-PrgK periplasmic rings
Descriptor: Pathogenicity 1 island effector protein, Protein PrgH
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2014-02-14
Release date:2015-01-14
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
4B9E
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BU of 4b9e by Molmil
Structure of a putative epoxide hydrolase from Pseudomonas aeruginosa, with bound MFA.
Descriptor: GLYCEROL, PROBABLE EPOXIDE HYDROLASE, SULFATE ION, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-04
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
Acta Crystallogr.,Sect.F, 69, 2013
4B9A
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BU of 4b9a by Molmil
Structure of a putative epoxide hydrolase from Pseudomonas aeruginosa.
Descriptor: GLYCEROL, PROBABLE EPOXIDE HYDROLASE, SULFATE ION
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-03
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
Acta Crystallogr.,Sect.F, 69, 2013
4BB0
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BU of 4bb0 by Molmil
Structure of a putative epoxide hydrolase Q244E mutant from Pseudomonas aeruginosa, with bound MFA.
Descriptor: PROBABLE EPOXIDE HYDROLASE, SULFATE ION, fluoroacetic acid
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-17
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of a Putative Epoxide Hydrolase Mutant
To be Published
4BAU
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BU of 4bau by Molmil
Structure of a putative epoxide hydrolase t131d mutant from Pseudomonas aeruginosa, with bound MFA
Descriptor: CHLORIDE ION, PROBABLE EPOXIDE HYDROLASE, SULFATE ION, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-16
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of a Putative Epoxide Hydrolase T131D Mutant from Pseudomonas Aeruginosa, with Bound Mfa
To be Published
2MKY
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BU of 2mky by Molmil
Structure of the PrgK first periplasmic domain
Descriptor: Pathogenicity 1 island effector protein
Authors:Bergeron, J, Mcintosh, L, Strynadka, N.
Deposit date:2014-02-14
Release date:2014-10-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
4G1I
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BU of 4g1i by Molmil
Structure of the PrgH periplasmic domain
Descriptor: PENTAETHYLENE GLYCOL, PHOSPHATE ION, Protein prgH
Authors:Bergeron, J.R.C, Worrall, L.J, Strynadka, N.C.J.
Deposit date:2012-07-10
Release date:2013-05-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
4BAT
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BU of 4bat by Molmil
Structure of a putative epoxide hydrolase t131d mutant from Pseudomonas aeruginosa.
Descriptor: CHLORIDE ION, GLYCEROL, PROBABLE EPOXIDE HYDROLASE, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-16
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of a Putative Epoxide Hydrolase T131D Mutant from Pseudomonas Aeruginosa.
To be Published
4BAZ
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BU of 4baz by Molmil
Structure of a putative epoxide hydrolase Q244E mutant from Pseudomonas aeruginosa.
Descriptor: CHLORIDE ION, GLYCEROL, PROBABLE EPOXIDE HYDROLASE, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-17
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of a Putative Epoxide Hydrolase Q244E Mutant from Pseudomonas Aeruginosa
To be Published
2NO5
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BU of 2no5 by Molmil
Crystal Structure analysis of a Dehalogenase with intermediate complex
Descriptor: (2S)-2-CHLOROPROPANOIC ACID, (S)-2-haloacid dehalogenase IVA, CHLORIDE ION, ...
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2006-10-24
Release date:2007-09-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4
J.Mol.Biol., 368, 2007
2NO4
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BU of 2no4 by Molmil
Crystal Structure analysis of a Dehalogenase
Descriptor: (S)-2-haloacid dehalogenase IVA, CHLORIDE ION, SULFATE ION
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2006-10-24
Release date:2007-09-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4
J.Mol.Biol., 368, 2007
4G08
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BU of 4g08 by Molmil
Crystal structure of the periplasmic domain of InvG
Descriptor: Protein InvG
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2012-07-09
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
3KDE
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BU of 3kde by Molmil
Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site
Descriptor: 5'-D(*(BRU)P*CP*CP*AP*CP*TP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3', Transposable element P transposase, ...
Authors:Sabogal, A, Lyubimov, A.Y, Berger, J.M, Rio, D.C.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.
Nat.Struct.Mol.Biol., 17, 2010
5JJK
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BU of 5jjk by Molmil
Rho transcription termination factor bound to rA7 and 6 ADP-BeF3 molecules
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
Deposit date:2016-04-24
Release date:2016-11-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
3C4O
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BU of 3c4o by Molmil
Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M/S130K/S146M complex
Descriptor: Beta-lactamase SHV-1, Beta-lactamase inhibitory protein, SULFATE ION
Authors:Reynolds, K.A, Hanes, M.S, Thomson, J.M, Antczak, A.J, Berger, J.M, Bonomo, R.A, Kirsch, J.F, Handel, T.M.
Deposit date:2008-01-30
Release date:2008-05-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
J.Mol.Biol., 382, 2008
4MN4
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BU of 4mn4 by Molmil
Structural Basis for the MukB-topoisomerase IV Interaction
Descriptor: Chromosome partition protein MukB, DNA topoisomerase 4 subunit A
Authors:Vos, S.M, Stewart, N.K, Oakley, M.G, Berger, J.M.
Deposit date:2013-09-09
Release date:2013-10-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo.
Embo J., 32, 2013
3B39
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BU of 3b39 by Molmil
Structure of the DnaG primase catalytic domain bound to ssDNA
Descriptor: DNA (5'-D(*DCP*DAP*DAP*DAP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DGP*DGP*DAP*DC)-3'), DNA primase
Authors:Corn, J.E, Pelton, J.G, Berger, J.M.
Deposit date:2007-10-19
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Identification of a DNA primase template tracking site redefines the geometry of primer synthesis.
Nat.Struct.Mol.Biol., 15, 2008
6U0W
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BU of 6u0w by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS K133M at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G.
Deposit date:2019-08-15
Release date:2019-08-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Toward the computational design of protein crystals with improved resolution.
Acta Crystallogr D Struct Biol, 75, 2019
6U0X
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BU of 6u0x by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS Q123D at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G.
Deposit date:2019-08-15
Release date:2019-08-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Toward the computational design of protein crystals with improved resolution.
Acta Crystallogr D Struct Biol, 75, 2019
2Q2E
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BU of 2q2e by Molmil
Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei
Descriptor: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A
Authors:Corbett, K.D, Benedetti, P, Berger, J.M.
Deposit date:2007-05-28
Release date:2007-07-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4 Å)
Cite:Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
Nat.Struct.Mol.Biol., 14, 2007

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