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PDB: 86 件

9BUN
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BU of 9bun by Molmil
RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine
分子名称: 5-carboxy methylrhodamine, IRIDIUM HEXAMMINE ION, RNA (48-MER)
著者Batey, R.T, Siwik, S.H.
登録日2024-05-17
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of RhoBAST RNA aptamer in complex with 5(6)-carboxytetramethylrhodamine (TAMRA)
To Be Published
5KPY
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BU of 5kpy by Molmil
Structure of a 5-hydroxytryptophan aptamer
分子名称: 5-hydroxy-L-tryptophan, 5-hydroxytryptophan RNA aptamer, IRIDIUM HEXAMMINE ION, ...
著者Batey, R.T, Porter, E, Merck, M.
登録日2016-07-05
公開日2017-01-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.
Nat. Chem. Biol., 13, 2017
3LQX
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BU of 3lqx by Molmil
SRP ribonucleoprotein core complexed with cobalt hexammine
分子名称: CHLORIDE ION, COBALT HEXAMMINE(III), POTASSIUM ION, ...
著者Batey, R.T.
登録日2010-02-10
公開日2010-03-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
Biochemistry, 41, 2002
3D0X
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BU of 3d0x by Molmil
Crystal Structure of the unbound lysine riboswitch
分子名称: RNA (161-MER)
著者Batey, R.T, Garst, A.D, Heroux, A, Rambo, R.P.
登録日2008-05-02
公開日2008-07-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of the lysine riboswitch regulatory mRNA element.
J.Biol.Chem., 283, 2008
1HQ1
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BU of 1hq1 by Molmil
STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE
分子名称: 4.5S RNA DOMAIN IV, MAGNESIUM ION, POTASSIUM ION, ...
著者Batey, R.T, Sagar, M.B, Doudna, J.A.
登録日2000-12-13
公開日2001-01-03
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle.
J.Mol.Biol., 307, 2001
1DUL
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BU of 1dul by Molmil
STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
分子名称: 4.5 S RNA DOMAIN IV, MAGNESIUM ION, POTASSIUM ION, ...
著者Batey, R.T, Rambo, R.P, Lucast, L, Rha, B, Doudna, J.A.
登録日2000-01-17
公開日2000-02-28
最終更新日2020-10-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the ribonucleoprotein core of the signal recognition particle.
Science, 287, 2000
4GMA
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BU of 4gma by Molmil
Crystal structure of the adenosylcobalamin riboswitch
分子名称: Adenosylcobalamin, Adenosylcobalamin riboswitch
著者Reyes, F.E, Johnson, J.E, Polaski, J.T, Batey, R.T.
登録日2012-08-15
公開日2012-10-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.94 Å)
主引用文献B12 cofactors directly stabilize an mRNA regulatory switch.
Nature, 492, 2012
6DN1
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA
分子名称: 10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium, MAGNESIUM ION, POTASSIUM ION, ...
著者Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
登録日2018-06-05
公開日2018-09-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
2G9C
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BU of 2g9c by Molmil
Modified pyrimidines Specifically bind the purine riboswitch
分子名称: ACETATE ION, COBALT HEXAMMINE(III), PYRIMIDINE-2,4,6-TRIAMINE, ...
著者Gilbert, S.D, Mediatore, S.J, Batey, R.T.
登録日2006-03-06
公開日2006-11-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Modified pyrimidines specifically bind the purine riboswitch.
J.Am.Chem.Soc., 128, 2006
2GIS
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BU of 2gis by Molmil
Structure of the S-adenosylmethionine riboswitch mRNA regulatory element
分子名称: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, S-ADENOSYLMETHIONINE, ...
著者Montange, R.K, Batey, R.T.
登録日2006-03-29
公開日2006-07-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the S-adenosylmethionine riboswitch regulatory mRNA element.
Nature, 441, 2006
3SD3
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BU of 3sd3 by Molmil
The structure of the tetrahydrofolate riboswitch containing a U25C mutation
分子名称: IRIDIUM HEXAMMINE ION, N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, Tetrahydrofolate riboswitch
著者Reyes, F.E, Trausch, J.J, Ceres, P, Batey, R.T.
登録日2011-06-08
公開日2011-09-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.
Structure, 19, 2011
4L81
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Structure of the SAM-I/IV riboswitch (env87(deltaU92, deltaG93))
分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, S-ADENOSYLMETHIONINE, ...
著者Trausch, J.J, Reyes, F.E, Edwards, A.L, Batey, R.T.
登録日2013-06-15
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural basis for diversity in the SAM clan of riboswitches.
Proc.Natl.Acad.Sci.USA, 111, 2014
6P2H
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BU of 6p2h by Molmil
Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches
分子名称: 2'-DEOXY-GUANOSINE, COBALT HEXAMMINE(III), MAGNESIUM ION, ...
著者Matyjasik, M.M, Batey, R.T.
登録日2019-05-21
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches.
Nucleic Acids Res., 47, 2019
3NPN
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BU of 3npn by Molmil
Structure of the s-adenosylhomocysteine riboswitch at 3.0A
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
著者Reyes, F.E, Edwards, A.E, Batey, R.T.
登録日2010-06-28
公開日2010-10-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.792 Å)
主引用文献Structural basis for recognition of S-adenosylhomocysteine by riboswitches.
Rna, 16, 2010
3NPQ
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Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
分子名称: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
著者Reyes, F.E, Edwards, A.E, Batey, R.T.
登録日2010-06-28
公開日2010-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1814 Å)
主引用文献Structural basis for recognition of S-adenosylhomocysteine by riboswitches.
Rna, 16, 2010
4XWF
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BU of 4xwf by Molmil
Crystal structure of the ZMP riboswitch at 1.80 angstrom
分子名称: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, CACODYLATE ION, IRIDIUM HEXAMMINE ION, ...
著者Trausch, J.J, Batey, R.T.
登録日2015-01-28
公開日2015-09-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch.
Chem.Biol., 22, 2015
4XW7
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Crystal structure of the ZMP riboswitch at 2.50 angstrom
分子名称: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Trausch, J.J, Batey, R.T.
登録日2015-01-28
公開日2015-09-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch.
Chem.Biol., 22, 2015
6DN2
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
分子名称: 4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid, MAGNESIUM ION, POTASSIUM ION, ...
著者Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
登録日2018-06-05
公開日2018-09-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DN3
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA
分子名称: 7,8-dimethyl-2,4-dioxo-10-(3-phenylpropyl)-1,2,3,4-tetrahydrobenzo[g]pteridin-10-ium, CHLORIDE ION, MAGNESIUM ION, ...
著者Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
登録日2018-06-05
公開日2018-09-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6UC8
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Guanine riboswitch bound to 8-aminoguanine
分子名称: 8-AMINOGUANINE, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Matyjasik, M.M, Hall, S.D, Batey, R.T.
登録日2019-09-15
公開日2020-07-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules, 25, 2020
6UC9
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Guanine riboswitch bound to O6-cyclohexylmethyl guanine
分子名称: 6-O-CYCLOHEXYLMETHYL GUANINE, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Matyjasik, M.M, Batey, R.T.
登録日2019-09-15
公開日2020-07-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.941 Å)
主引用文献High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules, 25, 2020
6UBU
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BU of 6ubu by Molmil
1.60 A resolution structure of the guanine riboswitch bound to guanine
分子名称: ACETATE ION, COBALT HEXAMMINE(III), GUANINE, ...
著者Matyjasik, M.M, Batey, R.T.
登録日2019-09-13
公開日2020-07-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules, 25, 2020
6UC7
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Structure of guanine riboswitch bound to N2-acetyl guanine
分子名称: COBALT HEXAMMINE(III), N-(6-oxo-6,9-dihydro-3H-purin-2-yl)acetamide, guanine riboswitch
著者Matyjasik, M.M, Batey, R.T.
登録日2019-09-15
公開日2020-07-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules, 25, 2020
1ZJR
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BU of 1zjr by Molmil
Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme
分子名称: GLYCEROL, SULFATE ION, tRNA (Guanosine-2'-O-)-methyltransferase
著者Pleshe, E, Truesdell, J, Batey, R.T.
登録日2005-04-30
公開日2005-08-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus.
Acta Crystallogr.,Sect.F, 61, 2005
4LVZ
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Structure of the THF riboswitch bound to 2,6-diaminopurine
分子名称: 9H-PURINE-2,6-DIAMINE, THF riboswitch
著者Trausch, J.J, Batey, R.T.
登録日2013-07-26
公開日2014-03-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014

 

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