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PDB: 122 件
1UGO
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Solution structure of the first Murine BAG domain of Bcl2-associated athanogene 5
分子名称: Bcl2-associated athanogene 5
著者Endoh, H, Hayashi, F, Seimiya, K, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-17
公開日2004-08-03
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
5GTF
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BU of 5gtf by Molmil
Crystal structure of onion lachrymatory factor synthase (LFS) containing glycerol
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Lachrymatory-factor synthase, ...
著者Takabe, J, Arakawa, T, Masamura, N, Tsuge, N, Imai, S, Fushinobu, S.
登録日2016-08-20
公開日2017-08-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase
Acs Catalysis, 10, 2020
4WH3
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BU of 4wh3 by Molmil
N-acetylhexosamine 1-kinase in complex with ATP
分子名称: ACETIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
著者Sato, M, Arakawa, T, Nam, Y.W, Nishimoto, M, Kitaoka, M, Fushinobu, S.
登録日2014-09-19
公開日2015-02-18
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Open-close structural change upon ligand binding and two magnesium ions required for the catalysis of N-acetylhexosamine 1-kinase
Biochim.Biophys.Acta, 1854, 2015
5GZH
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BU of 5gzh by Molmil
Endo-beta-1,2-glucanase from Chitinophaga pinensis - ligand free form
分子名称: Endo-beta-1,2-glucanase, IODIDE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Abe, K, Nakajima, M, Arakawa, T, Fushinobu, S, Taguchi, H.
登録日2016-09-28
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
1UFN
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BU of 1ufn by Molmil
Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
分子名称: putative nuclear protein homolog 5830484A20Rik
著者Tochio, N, Kobayashi, N, Koshiba, S, Kigawa, T, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-02
公開日2004-06-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
To be Published
5GQC
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BU of 5gqc by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form
分子名称: CALCIUM ION, Lacto-N-biosidase, SODIUM ION
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
1UG7
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Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806
分子名称: 2610208M17Rik protein
著者Li, H, Kigawa, T, Tomizawa, T, Koshiba, S, Inoue, M, Shirouzu, M, Terada, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-13
公開日2004-08-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806
To be Published
1UG8
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BU of 1ug8 by Molmil
NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
分子名称: Poly(A)-specific Ribonuclease
著者Nagata, T, Muto, Y, Hayami, N, Uda, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-15
公開日2004-08-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
To be Published
5GTE
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BU of 5gte by Molmil
Crystal structure of onion lachrymatory factor synthase (LFS), solute-free form
分子名称: Lachrymatory-factor synthase, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Takabe, J, Arakawa, T, Masamura, N, Tsuge, N, Imai, S, Fushinobu, S.
登録日2016-08-20
公開日2017-08-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase
Acs Catalysis, 10, 2020
1UG2
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BU of 1ug2 by Molmil
Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain
分子名称: 2610100B20Rik gene product
著者Zhao, C, Kigawa, T, Tochio, N, Koshiba, S, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-11
公開日2004-06-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain
To be Published
1UGJ
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BU of 1ugj by Molmil
Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16
分子名称: RIKEN cDNA 2310057J16 protein
著者Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-16
公開日2004-08-03
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16
To be Published
1UH6
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BU of 1uh6 by Molmil
Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
分子名称: ubiquitin-like 5
著者Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-25
公開日2003-12-25
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
To be Published
1UHS
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BU of 1uhs by Molmil
Solution structure of mouse homeodomain-only protein HOP
分子名称: homeodomain only protein
著者Saito, K, Koshiba, S, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Matsuda, T, Seki, E, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-07-10
公開日2004-07-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of mouse homeodomain-only protein HOP
To be Published
5GZK
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BU of 5gzk by Molmil
Endo-beta-1,2-glucanase from Chitinophaga pinensis - sophorotriose and glucose complex
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ...
著者Abe, K, Nakajima, M, Arakawa, T, Fushinobu, S, Taguchi, H.
登録日2016-09-28
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
1UHR
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BU of 1uhr by Molmil
Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
分子名称: SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily D member 1
著者Yamada, K, Saito, K, Nameki, N, Inoue, M, Koshiba, S, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Matsuda, T, Seki, E, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-07-09
公開日2004-08-24
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
To be Published
1UHW
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BU of 1uhw by Molmil
Solution structure of the DEP domain of mouse pleckstrin
分子名称: Pleckstrin
著者Inoue, K, Yoshida, M, Hatta, R, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-07-11
公開日2004-01-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the DEP domain of mouse pleckstrin
To be Published
1V9J
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BU of 1v9j by Molmil
Solution structure of a BolA-like protein from Mus musculus
分子名称: BolA-like protein RIKEN cDNA 1110025L05
著者Kasai, T, Inoue, M, Koshiba, S, Yabuki, T, Aoki, M, Nunokawa, E, Seki, E, Matsuda, T, Matsuda, N, Tomo, Y, Shirouzu, M, Terada, T, Obayashi, N, Hamana, H, Shinya, N, Tatsuguchi, A, Yasuda, S, Yoshida, M, Hirota, H, Matsuo, Y, Tani, K, Suzuki, H, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-26
公開日2004-02-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a BolA-like protein from Mus musculus
Protein Sci., 13, 2004
5GQG
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BU of 5gqg by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex
分子名称: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQF
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BU of 5gqf by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex
分子名称: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5AYI
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BU of 5ayi by Molmil
Crystal structure of GH1 Beta-glucosidase TD2F2 N223Q mutant
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, BETA-GLUCOSIDASE, GLYCEROL, ...
著者Jo, T, Manninen, J.A, Matsuzawa, T, Uchiyama, T, Yaoi, K, Arakawa, T, Fushinobu, S.
登録日2015-08-21
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2
Febs J., 283, 2016
6JU1
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BU of 6ju1 by Molmil
p-Hydroxybenzoate hydroxylase Y385F mutant complexed with 3,4-dihydroxybenzoate
分子名称: 3,4-DIHYDROXYBENZOIC ACID, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 4-hydroxybenzoate 3-monooxygenase, ...
著者Yato, M, Arakawa, T, Yamada, C, Fushinobu, S.
登録日2019-04-12
公開日2019-11-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Understanding the Molecular Mechanism Underlying the High Catalytic Activity ofp-Hydroxybenzoate Hydroxylase Mutants for Producing Gallic Acid.
Biochemistry, 58, 2019
5AYB
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BU of 5ayb by Molmil
Crystal structure of GH1 Beta-Glucosidase TD2F2 N223G mutant
分子名称: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, BETA-GLUCOSIDASE, ...
著者Jo, T, Manninen, J.A, Matsuzawa, T, Uchiyama, T, Yaoi, K, Arakawa, T, Fushinobu, S.
登録日2015-08-12
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2
Febs J., 283, 2016
3VYG
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BU of 3vyg by Molmil
Crystal structure of Thiocyanate hydrolase mutant R136W
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
登録日2012-09-25
公開日2013-11-13
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
5BXT
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LNBase in complex with LNB-NHAcAUS
分子名称: Lacto-N-biosidase, N-{[(1R,2R,3R,7S,7aR)-1,2,7-trihydroxyhexahydro-1H-pyrrolizin-3-yl]methyl}acetamide, SULFATE ION, ...
著者Ito, T, Arakawa, T, Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXP
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LNBase in complex with LNB-LOGNAc
分子名称: Lacto-N-biosidase, SULFATE ION, beta-D-galactopyranose-(1-3)-N-acetylglucosaminono-1,5-lactone (Z)-oxime
著者Ito, T, Arakawa, T, Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015

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