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PDB: 22 件

5D1Y
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BU of 5d1y by Molmil
Low resolution crystal structure of human ribonucleotide reductase alpha6 hexamer in complex with dATP
分子名称: Ribonucleoside-diphosphate reductase large subunit
著者Ando, N, Li, H, Brignole, E.J, Thompson, S, McLaughlin, M.I, Page, J, Asturias, F, Stubbe, J, Drennan, C.L.
登録日2015-08-04
公開日2016-01-20
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (9.005 Å)
主引用文献Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer.
Biochemistry, 55, 2016
8DYZ
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BU of 8dyz by Molmil
Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Meisburger, S.P, Ando, N.
登録日2022-08-05
公開日2022-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.272 Å)
主引用文献Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
8DZ7
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BU of 8dz7 by Molmil
Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Meisburger, S.P, Imran, S.M.S, Ando, N.
登録日2022-08-06
公開日2022-09-07
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
6M8F
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BU of 6m8f by Molmil
Engineered sperm whale myoglobin-based carbene transferase
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
著者Bacik, J.P, Ando, N, Fasan, R.
登録日2018-08-21
公開日2019-01-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.
Acs Catalysis, 9, 2019
6UYK
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BU of 6uyk by Molmil
Dark-operative protochlorophyllide oxidoreductase in the nucleotide-free form.
分子名称: CHLORIDE ION, IRON/SULFUR CLUSTER, Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
著者Bacik, J.P, Imran, S.M.S, Watkins, M.B, Corless, E, Antony, E, Ando, N.
登録日2019-11-13
公開日2020-12-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and released upon ATP binding.
J.Biol.Chem., 296, 2020
8ESU
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BU of 8esu by Molmil
Myoglobin variant Mb-imi complex
分子名称: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2022-10-14
公開日2023-12-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
8ESS
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BU of 8ess by Molmil
Myoglobin variant Mb-cIII complex
分子名称: Myoglobin, SULFATE ION, [2,18-bis(2-carboxyethyl)-7,12-diethenyl-3,8,13,17-tetramethyl-21-(2-oxo-3-phenylpropyl)porphyrin-21-iumato(2-)-kappa~3~N~22~,N~23~,N~24~]iron(2+)
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2022-10-14
公開日2023-12-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
7SPG
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BU of 7spg by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P212121
分子名称: CHLORIDE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2021-11-02
公開日2022-06-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPH
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BU of 7sph by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P21
分子名称: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2021-11-02
公開日2022-06-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPE
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BU of 7spe by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(O2beY)
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2021-11-02
公開日2022-06-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPF
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BU of 7spf by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(pCaaF)
分子名称: Myoglobin, NITRATE ION, OXYGEN MOLECULE, ...
著者Bacik, J.P, Fasan, R, Ando, N.
登録日2021-11-02
公開日2022-06-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
8G3H
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BU of 8g3h by Molmil
Structure of cobalamin-dependent methionine synthase (MetH) in a resting state
分子名称: COBALAMIN, Methionine synthase, ZINC ION
著者Watkins, M.B, Ando, N.
登録日2023-02-07
公開日2023-06-28
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Conformational switching and flexibility in cobalamin-dependent methionine synthase studied by small-angle X-ray scattering and cryoelectron microscopy.
Proc.Natl.Acad.Sci.USA, 120, 2023
7URG
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BU of 7urg by Molmil
cryo-EM structure of ribonucleotide reductase from Synechococcus phage S-CBP4 bound with TTP
分子名称: Ribonucleotide reductase, THYMIDINE-5'-TRIPHOSPHATE
著者Xu, D, Burnim, A.A, Ando, N.
登録日2022-04-21
公開日2022-09-07
最終更新日2022-10-05
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade.
Elife, 11, 2022
5V1Q
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BU of 5v1q by Molmil
Crystal structure of Streptococcus suis SuiB
分子名称: IRON/SULFUR CLUSTER, Radical SAM
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1S
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BU of 5v1s by Molmil
Crystal structure of Streptococcus suis SuiB bound to S-adenosylmethionine
分子名称: IRON/SULFUR CLUSTER, Radical SAM, S-ADENOSYLMETHIONINE
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.492 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1T
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BU of 5v1t by Molmil
Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA
分子名称: IRON/SULFUR CLUSTER, METHIONINE, Radical SAM, ...
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6MV9
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BU of 6mv9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-24
公開日2019-06-19
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MT9
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BU of 6mt9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-19
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MVE
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BU of 6mve by Molmil
Reduced X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-25
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MYX
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BU of 6myx by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited double-helical filament of NrdE alpha subunit with dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase
著者Thomas, W.C, Bacik, J.P, Chen, J.Z, Ando, N.
登録日2018-11-02
公開日2019-06-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6O2H
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BU of 6o2h by Molmil
Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset
分子名称: CHLORIDE ION, Lysozyme C, NITRATE ION
著者Meisburger, S.P, Ando, N.
登録日2019-02-22
公開日2020-02-26
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.212 Å)
主引用文献Diffuse X-ray scattering from correlated motions in a protein crystal.
Nat Commun, 11, 2020
6MW3
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BU of 6mw3 by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited filament composed of NrdE alpha subunit and NrdF beta subunit with dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase, Ribonucleoside-diphosphate reductase NrdF beta subunit
著者Thomas, W.C, Bacik, J.P, Kaelber, J.T, Ando, N.
登録日2018-10-29
公開日2019-06-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.65 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019

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