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PDB: 380 results

326D
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CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
393D
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CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)
Descriptor: DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3')
Authors:Ban, C, Sundaralingam, M, Ramakrishnan, B.
Deposit date:1998-04-29
Release date:1998-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)
To be Published
322D
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CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-HEXAGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3')
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
1D79
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HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION
Descriptor: DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
Authors:Thota, N, Li, X.H, Bingman, C.A, Sundaralingam, M.
Deposit date:1992-06-12
Release date:1993-04-15
Last modified:2023-03-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.
Acta Crystallogr.,Sect.D, 49, 1993
321D
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CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
394D
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CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)
Descriptor: DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3')
Authors:Ban, C, Sundaralingam, M.
Deposit date:1998-04-29
Release date:1998-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Two Self-Complementary Chimeric Decamers d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)
To be Published
1DNS
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BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC)
Descriptor: DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3'), SPERMINE
Authors:Jain, S.C, Zon, G, Sundaralingam, M.
Deposit date:1989-02-22
Release date:1990-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC).
Biochemistry, 28, 1989
332D
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CRYSTAL STRUCTURE OF R(GUGUGUA)D(C) WITH TANDEM G-U/U-G WOBBLE PAIRS WITH STRAND SLIPPAGE
Descriptor: DNA/RNA (5'-R(*GP*UP*GP*UP*GP*UP*AP*)-D(*C)-3')
Authors:Biswas, R, Sundaralingam, M.
Deposit date:1997-05-14
Release date:1997-09-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of r(GUGUGUA)dC with tandem G x U/U x G wobble pairs with strand slippage.
J.Mol.Biol., 270, 1997
2VEI
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Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties
Descriptor: GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE, SULFATE ION
Authors:Alahuhta, M, Salin, M, Casteleijn, M.G, Kemmer, C, El-Sayed, I, Augustyns, K, Neubauer, P, Wierenga, R.K.
Deposit date:2007-10-24
Release date:2008-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure-Based Protein Engineering Efforts with a Monomeric Tim Variant: The Importance of a Single Point Mutation for Generating an Active Site with Suitable Binding Properties.
Protein Eng.Des.Sel., 21, 2008
318D
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CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(CBR)P*GP*G)-3')
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
358D
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CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING
Descriptor: DNA (5'-D(*CP*(CBR)P*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN
Authors:Mitra, S.N, Chen, X, Sundaralingam, M.
Deposit date:1997-10-20
Release date:2000-05-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A novel end-to-end binding of two netropsins to the DNA decamers d(CCCCCIIIII)2, d(CCCBr5CCIIIII)2and d(CBr5CCCCIIIII)2.
Nucleic Acids Res., 26, 1998
320D
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CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
396D
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BU of 396d by Molmil
CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
Descriptor: DNA (5'-D(*GP*GP*CP*CP*GP*CP*GP*GP*CP*C)-3')
Authors:Ban, C, Sundaralingam, M.
Deposit date:1998-04-29
Release date:1998-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Two Isomophous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC)
To be Published
319D
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BU of 319d by Molmil
CRYSTAL STRUCTURES OF D(CCGGG(BR)5CCCGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*(CBR)P*CP*CP*GP*G)-3'), THERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
1FUF
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CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE
Descriptor: (5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3'), MAGNESIUM ION, SPERMINE
Authors:Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M.
Deposit date:2000-09-15
Release date:2001-11-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1DQH
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CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS
Descriptor: RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'), RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3')
Authors:Xiong, Y, Sundaralingam, M.
Deposit date:2000-01-04
Release date:2000-11-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.
RNA, 6, 2000
323D
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CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
395D
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CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
Descriptor: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3')
Authors:Ban, C, Sundaralingam, M.
Deposit date:1998-04-29
Release date:1998-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Two Isomorphous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC)
To be Published
325D
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BU of 325d by Molmil
CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM
Descriptor: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3')
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
375D
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A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN
Authors:Chen, X, Rao, S.T, Sekar, K, Sundaralingam, M.
Deposit date:1998-01-14
Release date:1998-12-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel End-to-End Binding of Two Netropsins to the DNA Decamers d(CCCCCIIIII) 2, d(CCCBr5CCIIIII)2, d(CBr5CCCCIIIII)2
Nucleic Acids Res., 26, 1998
324D
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CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
377D
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5'-R(*CP*GP*UP*AP*CP*DG)-3'
Descriptor: RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3')
Authors:Biswas, R, Mitra, S.N, Sundaralingam, M.
Deposit date:1998-01-26
Release date:1998-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:1.76 A structure of a pyrimidine start alternating A-RNA hexamer r(CGUAC)dG.
Acta Crystallogr.,Sect.D, 54, 1998
1H70
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DDAH FROM PSEUDOMONAS AERUGINOSA. C249S MUTANT COMPLEXED WITH CITRULLINE
Descriptor: CITRULLINE, NG, NG-DIMETHYLARGININE DIMETHYLAMINOHYDROLASE
Authors:Murray-Rust, J, Leiper, J, McAlister, M, Phelan, J, Tilley, S, Santamaria, J, Vallance, P, McDonald, N.
Deposit date:2001-06-30
Release date:2001-08-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the hydrolysis of cellular nitric oxide synthase inhibitors by dimethylarginine dimethylaminohydrolase.
Nat. Struct. Biol., 8, 2001
1SSG
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Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase
Descriptor: 2-PHOSPHOGLYCOLIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Kursula, I, Salin, M, Sun, J, Norledge, B.V, Haapalainen, A.M, Sampson, N.S, Wierenga, R.K.
Deposit date:2004-03-24
Release date:2004-08-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase
Protein Eng.Des.Sel., 17, 2004
1SW0
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Triosephosphate isomerase from Gallus gallus, loop 6 hinge mutant K174L, T175W
Descriptor: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase
Authors:Kursula, I, Salin, M, Sun, J, Norledge, B.V, Haapalainen, A.M, Sampson, N.S, Wierenga, R.K.
Deposit date:2004-03-30
Release date:2004-08-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase
Protein Eng.Des.Sel., 17, 2004

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