2D7H
| Crystal structure of the ccc complex of the N-terminal domain of PriA | Descriptor: | DNA (5'-D(P*CP*CP*C)-3'), Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-21 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7E
| Crystal structure of N-terminal domain of PriA from E.coli | Descriptor: | Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-18 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7G
| Crystal structure of the aa complex of the N-terminal domain of PriA | Descriptor: | DNA (5'-D(P*AP*A)-3'), Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-21 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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1UL5
| Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 7 | Descriptor: | ZINC ION, squamosa promoter binding protein-like 7 | Authors: | Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-09-09 | Release date: | 2004-03-09 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. J.Mol.Biol., 337, 2004
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1UL4
| Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4 | Descriptor: | ZINC ION, squamosa promoter binding protein-like 4 | Authors: | Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-09-09 | Release date: | 2004-03-09 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. J.Mol.Biol., 337, 2004
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4JP8
| Crystal structure of Pro-F17H/S324A | Descriptor: | CALCIUM ION, Tk-subtilisin | Authors: | Yuzaki, K, You, D.J, Uehara, R, Koga, Y, Kanaya, S. | Deposit date: | 2013-03-19 | Release date: | 2014-01-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain Protein Sci., 22, 2013
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3WT2
| Crystal structure of the b'-a' domain of thermophilic fungal protein disulfide isomerase (oxidized form) | Descriptor: | Protein disulfide-isomerase | Authors: | Inagaki, K, Satoh, T, Itoh, S.G, Okumura, H, Kato, K. | Deposit date: | 2014-04-02 | Release date: | 2014-11-26 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Redox-dependent conformational transition of catalytic domain of protein disulfide isomerase indicated by crystal structure-based molecular dynamics simulation Chem.Phys.Lett., 618, 2015
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2DWN
| Crystal structure of the PriA protein complexed with oligonucleotides | Descriptor: | DNA (5'-D(*A*G)-3'), Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D. | Deposit date: | 2006-08-15 | Release date: | 2006-11-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.35 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2CWR
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2KXE
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2DWL
| Crystal structure of the PriA protein complexed with oligonucleotides | Descriptor: | 5'-D(*AP*(DC))-3', Primosomal protein N | Authors: | Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D. | Deposit date: | 2006-08-15 | Release date: | 2006-11-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2DWM
| Crystal structure of the PriA protein complexed with oligonucleotides | Descriptor: | 5'-D(*AP*T)-3', Primosomal protein N | Authors: | Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D. | Deposit date: | 2006-08-15 | Release date: | 2006-11-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.15 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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5XZK
| Pholiota squarrosa lectin trimer | Descriptor: | lectin (PhoSL) | Authors: | Yamasaki, K. | Deposit date: | 2017-07-12 | Release date: | 2018-06-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | The trimeric solution structure and fucose-binding mechanism of the core fucosylation-specific lectin PhoSL. Sci Rep, 8, 2018
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1GCF
| NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, 12 STRUCTURES | Descriptor: | GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR | Authors: | Yamasaki, K, Naito, S, Anaguchi, H, Ohkubo, T, Ota, Y. | Deposit date: | 1997-04-10 | Release date: | 1997-10-22 | Last modified: | 2018-03-14 | Method: | SOLUTION NMR | Cite: | Solution structure of an extracellular domain containing the WSxWS motif of the granulocyte colony-stimulating factor receptor and its interaction with ligand. Nat.Struct.Biol., 4, 1997
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2RRK
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2RTS
| Chitin binding domain1 | Descriptor: | chitinase | Authors: | Uegaki, K. | Deposit date: | 2013-08-19 | Release date: | 2014-04-23 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus. J.Biochem., 155, 2014
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1YSE
| Solution structure of the MAR-binding domain of SATB1 | Descriptor: | DNA-binding protein SATB1 | Authors: | Yamasaki, K, Yamaguchi, H. | Deposit date: | 2005-02-08 | Release date: | 2006-01-03 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation J.Biol.Chem., 281, 2006
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2CZQ
| A novel cutinase-like protein from Cryptococcus sp. | Descriptor: | 1,2-ETHANEDIOL, CITRIC ACID, cutinase-like protein | Authors: | Masaki, K, Kamini, N.R, Ikeda, H, Iefuji, H, Kondo, H, Suzuki, M, Tsuda, S. | Deposit date: | 2005-07-14 | Release date: | 2006-07-14 | Last modified: | 2012-06-13 | Method: | X-RAY DIFFRACTION (1.05 Å) | Cite: | Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2 Proteins, 77, 2009
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1GCC
| SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE | Descriptor: | DNA (5'-D(*GP*CP*TP*GP*GP*CP*GP*GP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3'), ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 | Authors: | Yamasaki, K, Allen, M.D, Ohme-Takagi, M, Tateno, M, Suzuki, M. | Deposit date: | 1998-03-13 | Release date: | 1999-03-23 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J., 17, 1998
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1ISP
| Crystal structure of Bacillus subtilis lipase at 1.3A resolution | Descriptor: | GLYCEROL, lipase | Authors: | Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S. | Deposit date: | 2001-12-19 | Release date: | 2002-12-19 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution. Acta Crystallogr.,Sect.D, 58, 2002
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4YVF
| Structure of S-adenosyl-L-homocysteine hydrolase | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-{[5-chloro-2-(4-chlorophenoxy)phenyl](2-{[2-(methylamino)ethyl]amino}-2-oxoethyl)amino}-N-(1,3-dihydro-2H-isoindol-2-yl)-N-methylacetamide, Adenosylhomocysteinase | Authors: | Akiko, K. | Deposit date: | 2015-03-20 | Release date: | 2015-11-25 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Discovery and structural analyses of S-adenosyl-L-homocysteine hydrolase inhibitors based on non-adenosine analogs. Bioorg.Med.Chem., 23, 2015
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1Y56
| Crystal structure of L-proline dehydrogenase from P.horikoshii | Descriptor: | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... | Authors: | Tsuge, H, Kawakami, R, Sakuraba, H, Ago, H, Miyano, M, Aki, K, Katunuma, N, Ohshima, T. | Deposit date: | 2004-12-02 | Release date: | 2005-07-26 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.86 Å) | Cite: | Crystal structure of a novel FAD-, FMN-, and ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii J.Biol.Chem., 280, 2005
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7X30
| Capsid structure of Staphylococcus jumbo bacteriophage S6 | Descriptor: | Hoc-like protein ORF90, Major structural protein ORF12 | Authors: | Koibuchi, W, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | Deposit date: | 2022-02-27 | Release date: | 2023-12-06 | Method: | ELECTRON MICROSCOPY (3.6 Å) | Cite: | Capsid structure of Staphylococcus jumbo bacteriophage S6 To Be Published
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1MH5
| The Structure Of The Complex Of The Fab Fragment Of The Esterolytic Antibody MS6-164 and A Transition-State Analog | Descriptor: | IMMUNOGLOBULIN MS6-164, N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE, SULFATE ION | Authors: | Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W. | Deposit date: | 2002-08-19 | Release date: | 2003-09-23 | Last modified: | 2011-11-16 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity J.Mol.Biol., 332, 2003
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1MJ8
| High Resolution Crystal Structure Of The Fab Fragment of The Esterolytic Antibody MS6-126 | Descriptor: | GLYCEROL, IMMUNOGLOBULIN MS6-126, PHOSPHATE ION | Authors: | Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W. | Deposit date: | 2002-08-27 | Release date: | 2003-09-23 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity J.Mol.Biol., 332, 2003
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