6W1P
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![BU of 6w1p by Molmil](/molmil-images/mine/6w1p) | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | Descriptor: | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... | Authors: | Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. | Deposit date: | 2020-03-04 | Release date: | 2020-05-13 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.26 Å) | Cite: | Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020
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6W1H
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![BU of 6w1h by Molmil](/molmil-images/mine/6w1h) | Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Pseudomonas putida | Descriptor: | 2-OXOADIPIC ACID, Hydroxyglutarate synthase, NICKEL (II) ION | Authors: | Pereira, J.H, Thompson, M.G, Blake-Hedges, J.M, Keasling, J.D, Adams, P.D. | Deposit date: | 2020-03-04 | Release date: | 2020-06-24 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism. Nat Commun, 11, 2020
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6W1R
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![BU of 6w1r by Molmil](/molmil-images/mine/6w1r) | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom resolution | Descriptor: | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... | Authors: | Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. | Deposit date: | 2020-03-04 | Release date: | 2020-05-13 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.23 Å) | Cite: | Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020
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6W1V
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![BU of 6w1v by Molmil](/molmil-images/mine/6w1v) | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | Descriptor: | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... | Authors: | Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. | Deposit date: | 2020-03-04 | Release date: | 2020-06-03 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020
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7UOR
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![BU of 7uor by Molmil](/molmil-images/mine/7uor) | Crystal structure of cytochrome P450 enzyme CYP119 in complex with methyliridium(III) mesoporphyrin. | Descriptor: | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cytochrome, NICKEL (II) ION, ... | Authors: | Pereira, J.H, Bloomer, B.J, Hartwig, J.F, Adams, P.D. | Deposit date: | 2022-04-13 | Release date: | 2023-02-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.16 Å) | Cite: | Mechanistic and structural characterization of an iridium-containing cytochrome reveals kinetically relevant cofactor dynamics Nat Catal, 6, 2023
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3SDR
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![BU of 3sdr by Molmil](/molmil-images/mine/3sdr) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | Alpha-bisabolene synthase, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-09 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3SDT
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![BU of 3sdt by Molmil](/molmil-images/mine/3sdt) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE, Alpha-bisabolene synthase, CHLORIDE ION, ... | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-09 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3RUW
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![BU of 3ruw by Molmil](/molmil-images/mine/3ruw) | Crystal structure of Cpn-rls in complex with ADP-AlFx from Methanococcus maripaludis | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Chaperonin, ... | Authors: | Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D. | Deposit date: | 2011-05-05 | Release date: | 2012-01-04 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.702 Å) | Cite: | Mechanism of nucleotide sensing in group II chaperonins. Embo J., 31, 2012
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3SDV
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![BU of 3sdv by Molmil](/molmil-images/mine/3sdv) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | (1-hydroxyethane-1,1-diyl)bis(phosphonic acid), Alpha-bisabolene synthase, CHLORIDE ION, ... | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-09 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3RUV
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![BU of 3ruv by Molmil](/molmil-images/mine/3ruv) | Crystal structure of Cpn-rls in complex with ATP analogue from Methanococcus maripaludis | Descriptor: | Chaperonin, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | Authors: | Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D. | Deposit date: | 2011-05-05 | Release date: | 2012-01-04 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.242 Å) | Cite: | Mechanism of nucleotide sensing in group II chaperonins. Embo J., 31, 2012
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3RUQ
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![BU of 3ruq by Molmil](/molmil-images/mine/3ruq) | Crystal structure of Cpn-WT in complex with ADP from Methanococcus maripaludis | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Chaperonin, MAGNESIUM ION | Authors: | Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, Frydman, J, Adams, P.D. | Deposit date: | 2011-05-05 | Release date: | 2012-01-04 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.798 Å) | Cite: | Mechanism of nucleotide sensing in group II chaperonins. Embo J., 31, 2012
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3RUS
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![BU of 3rus by Molmil](/molmil-images/mine/3rus) | Crystal structure of Cpn-rls in complex with ADP from Methanococcus maripaludis | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Chaperonin, MAGNESIUM ION, ... | Authors: | Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D. | Deposit date: | 2011-05-05 | Release date: | 2012-01-04 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.338 Å) | Cite: | Mechanism of nucleotide sensing in group II chaperonins. Embo J., 31, 2012
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3SAE
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![BU of 3sae by Molmil](/molmil-images/mine/3sae) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | Alpha-bisabolene synthase, CHLORIDE ION, GLYCEROL, ... | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-02 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.96 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3U48
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![BU of 3u48 by Molmil](/molmil-images/mine/3u48) | From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis | Descriptor: | CALCIUM ION, JMB19063, beta-D-glucopyranose | Authors: | McAndrew, R.P, Park, J.I, Reindl, W, Friedland, G.D, D'haeseleer, P, Northen, T, Sale, K.L, Simmons, B.A, Adams, P.D. | Deposit date: | 2011-10-07 | Release date: | 2013-04-10 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis To be Published
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3SDQ
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![BU of 3sdq by Molmil](/molmil-images/mine/3sdq) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | Alpha-bisabolene synthase, CHLORIDE ION, GLYCEROL | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-09 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3SDU
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![BU of 3sdu by Molmil](/molmil-images/mine/3sdu) | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production | Descriptor: | Alpha-bisabolene synthase, CHLORIDE ION, GERANYL S-THIOLODIPHOSPHATE, ... | Authors: | McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D. | Deposit date: | 2011-06-09 | Release date: | 2011-12-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production. Structure, 19, 2011
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3U4A
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![BU of 3u4a by Molmil](/molmil-images/mine/3u4a) | From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis | Descriptor: | CALCIUM ION, JMB19063, beta-D-glucopyranose, ... | Authors: | McAndrew, R.P, Park, J.I, Reindl, W, Friedland, G.D, D'haeseleer, P, Northen, T, Sale, K.L, Simmons, B.A, Adams, P.D. | Deposit date: | 2011-10-07 | Release date: | 2013-04-10 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.196 Å) | Cite: | From soil to structure: a novel dimeric family 3-beta--glucosidase isolated from compost using metagenomic analysis To be Published
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7T1J
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![BU of 7t1j by Molmil](/molmil-images/mine/7t1j) | Crystal structure of RUBISCO from Rhodospirillaceae bacterium BRH_c57 | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase | Authors: | Pereira, J.H, Liu, A.K, Shih, P.M, Adams, P.D. | Deposit date: | 2021-12-02 | Release date: | 2022-09-07 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.96 Å) | Cite: | Structural plasticity enables evolution and innovation of RuBisCO assemblies. Sci Adv, 8, 2022
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7T1C
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![BU of 7t1c by Molmil](/molmil-images/mine/7t1c) | |
6URA
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![BU of 6ura by Molmil](/molmil-images/mine/6ura) | Crystal structure of RUBISCO from Promineofilum breve | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain | Authors: | Pereira, J.H, Banda, D.M, Liu, A.K, Shih, P.M, Adams, P.D. | Deposit date: | 2019-10-23 | Release date: | 2020-08-19 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.17 Å) | Cite: | Novel bacterial clade reveals origin of form I Rubisco. Nat.Plants, 6, 2020
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8EAW
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![BU of 8eaw by Molmil](/molmil-images/mine/8eaw) | |
6VAP
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![BU of 6vap by Molmil](/molmil-images/mine/6vap) | Structure of the type II thioesterase BorB from the borrelidin biosynthetic cluster | Descriptor: | Thioesterase | Authors: | Pereira, J.H, Curran, S.C, Baluyot, M.-J, Lake, J, Putz, H, Rosenburg, D, Keasling, J, Adams, P.D. | Deposit date: | 2019-12-17 | Release date: | 2020-05-06 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Structure and Function of BorB, the Type II Thioesterase from the Borrelidin Biosynthetic Gene Cluster. Biochemistry, 59, 2020
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2HEK
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![BU of 2hek by Molmil](/molmil-images/mine/2hek) | Crystal structure of O67745, a hypothetical protein from Aquifex aeolicus at 2.0 A resolution. | Descriptor: | BROMIDE ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Oganesyan, V, Jancarik, J, Adams, P.D, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC) | Deposit date: | 2006-06-21 | Release date: | 2006-07-04 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.997 Å) | Cite: | Structure of O67745_AQUAE, a hypothetical protein from Aquifex aeolicus. Acta Crystallogr.,Sect.F, 63, 2007
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8D3T
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![BU of 8d3t by Molmil](/molmil-images/mine/8d3t) | Crystal structure of GalS1 from Populus trichocarpas | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Pereira, J.H, Prabhakar, P.K, Urbanowicz, B.R, Adams, P.D. | Deposit date: | 2022-06-01 | Release date: | 2023-03-15 | Last modified: | 2023-04-05 | Method: | X-RAY DIFFRACTION (2.37 Å) | Cite: | Structural and biochemical insight into a modular beta-1,4-galactan synthase in plants. Nat.Plants, 9, 2023
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8D3Z
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![BU of 8d3z by Molmil](/molmil-images/mine/8d3z) | Crystal structure of GalS1 in complex with Manganese from Populus trichocarpas | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Galactan synthase, ... | Authors: | Pereira, J.H, Prabhakar, P.K, Urbanowicz, B.R, Adams, P.D. | Deposit date: | 2022-06-01 | Release date: | 2023-03-15 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.56 Å) | Cite: | Structural and biochemical insight into a modular beta-1,4-galactan synthase in plants. Nat.Plants, 9, 2023
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