PDB Search results for query - 일본 단백질구조 데이터 뱅크

PDB: 179 results

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0O

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0M

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0L

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16) To Be Published

8UIR

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-10-10
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0S

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0V

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5) To Be Published

8V0X

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5) To Be Published

8V0W

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5) To Be Published

8V0N

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0R

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0Q

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0U

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5) To Be Published

7THE

Structure of RBD directed antibody DH1042 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interface
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, DH1042 Fab Heavy Chain, DH1042 Fab Light Chain, ...
Authors:	May, A.J, Manne, K, Acharya, P.
Deposit date:	2022-01-10
Release date:	2022-02-16
Last modified:	2022-08-03
Method:	ELECTRON MICROSCOPY (3.87 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

8UKF

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-10-12
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-EG.5) To Be Published

8UKD

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-10-12
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.5) To Be Published

8U1D

Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, DH1285 Heavy Chain, DH1285 Light Chain, ...
Authors:	Thakur, B, Stalls, V.D, Acharya, P.
Deposit date:	2023-08-31
Release date:	2024-01-03
Last modified:	2024-07-17
Method:	ELECTRON MICROSCOPY (4.25 Å)
Cite:	Vaccine induction of CD4-mimicking HIV-1 broadly neutralizing antibody precursors in macaques. Cell, 187, 2024

7UB0

SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Stalls, V, Acharya, P.
Deposit date:	2022-03-14
Release date:	2022-04-20
Last modified:	2022-07-13
Method:	ELECTRON MICROSCOPY (3.31 Å)
Cite:	Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike. Cell Rep, 39, 2022

7UB6

SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Stalls, V, Acharya, P.
Deposit date:	2022-03-14
Release date:	2022-04-20
Last modified:	2022-07-13
Method:	ELECTRON MICROSCOPY (3.52 Å)
Cite:	Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike. Cell Rep, 39, 2022

7UB5

SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Stalls, V, Acharya, P.
Deposit date:	2022-03-14
Release date:	2022-04-20
Last modified:	2022-07-13
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike. Cell Rep, 39, 2022

7TLA

Down-state locked rS2d SARS-CoV-2 spike ectodomain in the RBD-down conformation, State 1
Descriptor:	Spike glycoprotein
Authors:	Henderson, R, Acharya, P.
Deposit date:	2022-01-18
Release date:	2022-02-02
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TLD

Down-state locked, S2 stabilized rS2d-HexaPro SARS-CoV-2 spike ectodomain in the RBD-down conformation, State 2
Descriptor:	Spike glycoprotein
Authors:	Henderson, R, Acharya, P.
Deposit date:	2022-01-18
Release date:	2022-02-02
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (2.89 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TLB

Down-state locked rS2d SARS-CoV-2 spike ectodomain in the RBD-down conformation, State 2
Descriptor:	Spike glycoprotein
Authors:	Henderson, R, Acharya, P.
Deposit date:	2022-01-18
Release date:	2022-02-02
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.06 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TLC

Down-state locked, S2 stabilized rS2d-HexaPro SARS-CoV-2 spike ectodomain in the RBD-down conformation, State 1
Descriptor:	Spike glycoprotein
Authors:	Henderson, R, Acharya, P.
Deposit date:	2022-01-18
Release date:	2022-02-02
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (2.83 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TCO

Cryo-EM structure of CH235.12 in complex with HIV-1 Env trimer CH505TF.N279K.G458Y.SOSIP.664 with high-mannose glycans
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CH235.12 Fab Heavy Chain, ...
Authors:	Manne, K, Henderson, R, Acharya, P.
Deposit date:	2021-12-27
Release date:	2023-08-02
Method:	ELECTRON MICROSCOPY (4.19 Å)
Cite:	Cryo-EM structure of CH235.12 in complex with HIV-1 Env trimer CH505TF.N279K.G458Y.SOSIP.664 To Be Published

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Total results:	179
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Acharya, P"