Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 317 件

2RU8
DownloadVisualize
BU of 2ru8 by Molmil
DnaT C-terminal domain
分子名称: Primosomal protein 1
著者Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T.
登録日2014-01-29
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex.
Febs J., 281, 2014
2RUP
DownloadVisualize
BU of 2rup by Molmil
Solution structure of rat P2X4 receptor head domain
分子名称: P2X purinoceptor 4
著者Abe, Y, Igawa, T, Tsuda, M, Inoue, K, Ueda, T.
登録日2014-11-12
公開日2015-02-04
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of the rat P2X4 receptor head domain involved in inhibitory metal binding
FEBS Lett., 589, 2015
1OM2
DownloadVisualize
BU of 1om2 by Molmil
SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH)
分子名称: PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE), PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20)
著者Abe, Y, Shodai, T, Muto, T, Mihara, K, Torii, H, Nishikawa, S, Endo, T, Kohda, D.
登録日1999-04-23
公開日2000-02-02
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20.
Cell(Cambridge,Mass.), 100, 2000
5YCQ
DownloadVisualize
BU of 5ycq by Molmil
Unique Specificity-Enhancing Factor for the AAA+ Lon Protease
分子名称: Heat shock protein HspQ
著者Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T.
登録日2017-09-08
公開日2018-04-11
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation
FEBS Lett., 591, 2017
3WW6
DownloadVisualize
BU of 3ww6 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46D/D52S
分子名称: CHLORIDE ION, Lysozyme C
著者Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
登録日2014-06-17
公開日2015-06-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
3WW5
DownloadVisualize
BU of 3ww5 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46E/D52S
分子名称: CHLORIDE ION, Lysozyme C
著者Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
登録日2014-06-17
公開日2015-06-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
2D35
DownloadVisualize
BU of 2d35 by Molmil
Solution structure of Cell Division Reactivation Factor, CedA
分子名称: Cell division activator cedA
著者Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T.
登録日2005-09-26
公開日2006-12-12
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli
To be Published
2E0G
DownloadVisualize
BU of 2e0g by Molmil
DnaA N-terminal domain
分子名称: Chromosomal replication initiator protein dnaA
著者Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-07
公開日2007-05-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
To be Published
6L06
DownloadVisualize
BU of 6l06 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (apo-form)
分子名称: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L07
DownloadVisualize
BU of 6l07 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (PE-bound form)
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
7BYU
DownloadVisualize
BU of 7byu by Molmil
Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form)
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase
著者Watanabe, Y, Fukui, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.206 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
7BYW
DownloadVisualize
BU of 7byw by Molmil
Crystal structure of Acidovorax avenae L-fucose mutarotase (L-fucose-bound form)
分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase, alpha-L-fucopyranose
著者Watanabe, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
6J7C
DownloadVisualize
BU of 6j7c by Molmil
Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline
分子名称: PROLINE, Proline racemase
著者Watanabe, Y, Watanabe, S, Itoh, Y, Watanabe, Y.
登録日2019-01-17
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
7C0D
DownloadVisualize
BU of 7c0d by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2020-09-02
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0E
DownloadVisualize
BU of 7c0e by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Ono, A, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
DownloadVisualize
BU of 7c0c by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Nobuchi, R, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
4YTV
DownloadVisualize
BU of 4ytv by Molmil
Crystal structure of Mdm35
分子名称: COBALT (II) ION, GLYCEROL, Mitochondrial distribution and morphology protein 35
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTW
DownloadVisualize
BU of 4ytw by Molmil
Crystal structure of Ups1-Mdm35 complex
分子名称: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTX
DownloadVisualize
BU of 4ytx by Molmil
Crystal structure of Ups1-Mdm35 complex with PA
分子名称: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
7YPD
DownloadVisualize
BU of 7ypd by Molmil
Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
分子名称: Carbonyl reductase, MAGNESIUM ION
著者Watanabe, Y, Asano, Y, Hibi, M.
登録日2022-08-03
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
To Be Published
2KZB
DownloadVisualize
BU of 2kzb by Molmil
Solution structure of alpha-mannosidase binding domain of Atg19
分子名称: Autophagy-related protein 19
著者Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F.
登録日2010-06-15
公開日2010-07-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
2KZK
DownloadVisualize
BU of 2kzk by Molmil
Solution structure of alpha-mannosidase binding domain of Atg34
分子名称: Uncharacterized protein YOL083W
著者Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F.
登録日2010-06-18
公開日2010-07-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
6JNJ
DownloadVisualize
BU of 6jnj by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (apo-form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
5JGE
DownloadVisualize
BU of 5jge by Molmil
Crystal structure of Atg19 coiled-coil complexed with Ape1 propeptide
分子名称: Ape1 propeptide, Autophagy-related protein 19
著者Watanabe, Y, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
6JNK
DownloadVisualize
BU of 6jnk by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (NADP-bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon