PDB Search results for query - Protein Data Bank Japan

PDB: 355 results

STRUCTURAL BASIS OF ALPHA-HELIX PROPENSITY AT TWO SITES IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1992-12-17
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural basis of amino acid alpha helix propensity. Science, 260, 1993

115L

STRUCTURAL BASIS OF ALPHA-HELIX PROPENSITY AT TWO SITES IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1992-12-17
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural basis of amino acid alpha helix propensity. Science, 260, 1993

114L

STRUCTURAL BASIS OF ALPHA-HELIX PROPENSITY AT TWO SITES IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1992-12-17
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural basis of amino acid alpha helix propensity. Science, 260, 1993

119L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

118L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

120L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

123L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

125L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

126L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

128L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

127L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

137L

STRUCTURAL BASIS OF AMINO ACID ALPHA HELIX PROPENSITY
Descriptor:	T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-08-17
Release date:	1994-07-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Structural basis of amino acid alpha helix propensity. Science, 260, 1993

3VU3

Crystal structure of the Hfq and catalase HPII complex
Descriptor:	Catalase HPII, PROTOPORPHYRIN IX CONTAINING FE, Protein hfq
Authors:	Watanabe, M, Yonekura, K.
Deposit date:	2012-06-15
Release date:	2013-11-20
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.85 Å)
Cite:	Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex Plos One, 8, 2013

7K8X

Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 1)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, C121 Fab Heavy chain, C121 Fab Light chain, ...
Authors:	Abernathy, M.E, Barnes, C.O, Bjorkman, P.J.
Deposit date:	2020-09-27
Release date:	2020-10-21
Last modified:	2021-01-13
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies. Nature, 588, 2020

7K8Y

Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, C121 Fab Heavy chain, C121 Fab Light chain, ...
Authors:	Abernathy, M.E, Barnes, C.O, Bjorkman, P.J.
Deposit date:	2020-09-27
Release date:	2020-10-21
Last modified:	2021-01-13
Method:	ELECTRON MICROSCOPY (4.4 Å)
Cite:	SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies. Nature, 588, 2020

7DE8

Crystal Structure of outer membrane protein PorB with G103K mutations from Neisseria meningitidis W135
Descriptor:	Outer membrane protein
Authors:	Tanabe, M, Kattner, C.
Deposit date:	2020-11-02
Release date:	2021-03-31
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.76 Å)
Cite:	An antibiotic-resistance conferring mutation in a neisserial porin: Structure, ion flux, and ampicillin binding. Biochim Biophys Acta Biomembr, 1863, 2021

7K8Q

Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C121
Descriptor:	C121 Fab Heavy Chain, C121 Fab Light Chain, GLYCEROL
Authors:	Abernathy, M.E, Barnes, C.O, Bjorkman, P.J.
Deposit date:	2020-09-27
Release date:	2020-10-21
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies. Nature, 588, 2020

122L

THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor:	BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:	Blaber, M, Matthews, B.W.
Deposit date:	1993-05-28
Release date:	1993-10-31
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. Biochemistry, 32, 1993

4QAL

Crystal structure of C117A mutant of human acidic fibroblast growth factor
Descriptor:	CITRATE ANION, Fibroblast growth factor 1
Authors:	Blaber, M, Xia, X.
Deposit date:	2014-05-05
Release date:	2015-03-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Mutation choice to eliminate buried free cysteines in protein therapeutics. J.Pharm.Sci., 104, 2015

4QBC

Crystal structure of C117T mutant of human acidic fibroblast growth factor in sodium formate buffer
Descriptor:	FORMIC ACID, Fibroblast growth factor 1, SULFATE ION
Authors:	Blaber, M, Xia, X.
Deposit date:	2014-05-07
Release date:	2015-03-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.519 Å)
Cite:	Mutation choice to eliminate buried free cysteines in protein therapeutics. J.Pharm.Sci., 104, 2015

4QBV

Crystal structure of C117T mutant of human acidic fibroblast growth factor in sodium citrate buffer
Descriptor:	CITRATE ANION, Fibroblast growth factor 1
Authors:	Blaber, M, Xia, X.
Deposit date:	2014-05-08
Release date:	2015-03-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.497 Å)
Cite:	Mutation choice to eliminate buried free cysteines in protein therapeutics. J.Pharm.Sci., 104, 2015

4QC4

Crystal structure of C117S mutant of human acidic fibroblast growth factor
Descriptor:	CITRATE ANION, Fibroblast growth factor 1, IMIDAZOLE, ...
Authors:	Blaber, M, Xia, X.
Deposit date:	2014-05-09
Release date:	2015-03-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.491 Å)
Cite:	Mutation choice to eliminate buried free cysteines in protein therapeutics. J.Pharm.Sci., 104, 2015

4Q9P

Crystal structure of C16T/K12V/C117V/P134V mutant of human acidic fibroblast growth factor
Descriptor:	Fibroblast growth factor 1
Authors:	Blaber, M, Xia, X.
Deposit date:	2014-05-01
Release date:	2015-03-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Mutation choice to eliminate buried free cysteines in protein therapeutics. J.Pharm.Sci., 104, 2015

7WDR

Crystal structures of MeBglD2 in complex with various saccharides
Descriptor:	4-nitrophenyl beta-D-glucopyranoside, Beta-glucosidase, SULFATE ION
Authors:	Watanabe, M, Matsuzawa, T, Nakamichi, Y, Akita, H, Yaoi, K.
Deposit date:	2021-12-22
Release date:	2022-11-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol., 106, 2022

7WDP

Crystal structures of MeBglD2 in complex with various saccharides
Descriptor:	Beta-glucosidase, SULFATE ION, alpha-D-glucopyranose, ...
Authors:	Watanabe, M, Matsuzawa, T, Nakamichi, Y, Akita, H, Yaoi, K.
Deposit date:	2021-12-22
Release date:	2022-11-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.39 Å)
Cite:	Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides Appl.Microbiol.Biotechnol., 106, 2022

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Total results:	355
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Abe, M"