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PDB: 133 results
4Y1B
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BU of 4y1b by Molmil
Structure of crotonyl-CoA carboxylase/reductase AntE V350A in complex with NADP
Descriptor: AntE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Abe, I, Zhang, L, Mori, T.
Deposit date:2015-02-07
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Rational Control of Polyketide Extender Units by Structure-Based Engineering of a Crotonyl-CoA Carboxylase/Reductase in Antimycin Biosynthesis
Angew.Chem.Int.Ed.Engl., 54, 2015
4Y0K
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BU of 4y0k by Molmil
Structure of crotonyl-CoA carboxylase/reductase AntE in complex with NADP
Descriptor: AntE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Abe, I, Zhang, L, Mori, T.
Deposit date:2015-02-06
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.203 Å)
Cite:Rational Control of Polyketide Extender Units by Structure-Based Engineering of a Crotonyl-CoA Carboxylase/Reductase in Antimycin Biosynthesis
Angew.Chem.Int.Ed.Engl., 54, 2015
7YN3
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BU of 7yn3 by Molmil
Crystal structure of CcbD complex with CcbZ carrier protein domain
Descriptor: 1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione, 4'-PHOSPHOPANTETHEINE, CcbD, ...
Authors:Mori, T, Lyu, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of CcbD complex with carrier protein
To Be Published
7YN1
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BU of 7yn1 by Molmil
Crystal structure of selenomethionine labeled CcbD
Descriptor: CcbD
Authors:Mori, T, Kadlcik, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of selenomethionine labeled CcbD
To Be Published
7YN2
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BU of 7yn2 by Molmil
Crystal structure of CcbD with methylthiolincosamide
Descriptor: (2R,3R,4S,5R,6R)-2-[(1R,2R)-1-azanyl-2-oxidanyl-propyl]-6-methylsulfanyl-oxane-3,4,5-triol, CcbD
Authors:Mori, T, Lyu, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of CcbD with methylthiolincosamide
To Be Published
6J82
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BU of 6j82 by Molmil
Crystal structure of TleB apo
Descriptor: Cytochrome P-450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Alblova, M, Nakamura, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J88
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BU of 6j88 by Molmil
Crystal structure of HinD with benzo[b]thiophen analog
Descriptor: N-[(2S)-1-(1-benzothiophen-3-yl)-3-hydroxypropan-2-yl]-N~2~-methyl-L-valinamide, Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J86
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BU of 6j86 by Molmil
Crystal structure of HinD with NMFT
Descriptor: N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-Nalpha-methyl-L-phenylalaninamide, Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J85
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BU of 6j85 by Molmil
Crystal structure of HinD apo
Descriptor: Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J83
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BU of 6j83 by Molmil
Crystal structure of TleB with NMVT
Descriptor: Cytochrome P-450, N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-N~2~-methyl-L-valinamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J87
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BU of 6j87 by Molmil
Crystal structure of HinD with NMFT and NO
Descriptor: N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-Nalpha-methyl-L-phenylalaninamide, NITRIC OXIDE, Nocardicin N-oxygenase, ...
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J84
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BU of 6j84 by Molmil
Crystal structure of TleB with hydroxyl analog
Descriptor: (2S)-2-hydroxy-N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-3-methylbutanamide, Cytochrome P-450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nakamura, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
8IYF
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BU of 8iyf by Molmil
Structure of VldE-H182A in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Validamine 7-phosphate valienyltransferase
Authors:Wong, C.P, Mori, T, Mahmud, T, Abe, I.
Deposit date:2023-04-04
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of VldE-H182A in complex with GDP
To Be Published
8IYE
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BU of 8iye by Molmil
Structure of VldE-D158N in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Validamine 7-phosphate valienyltransferase
Authors:Wong, C.P, Mori, T, Mahmud, T, Abe, I.
Deposit date:2023-04-04
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of VldE-D158N in complex with GDP
To Be Published
8J5E
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BU of 8j5e by Molmil
Crystal structure of kinase AbmG in complex with 4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-thiocytidine
To Be Published
8J5F
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BU of 8j5f by Molmil
Crystal structure of kinase AbmG in complex with cytidine and ADP
Descriptor: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, ADENOSINE-5'-DIPHOSPHATE, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with cytidine and ADP
To Be Published
8J5G
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BU of 8j5g by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
Descriptor: Deoxyadenosine/deoxycytidine kinase, [(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl] phosphono hydrogen phosphate
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
To Be Published
8IXP
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BU of 8ixp by Molmil
Apo structure of glycosyltransferase LmbT wild type
Descriptor: Glycosyltransferase
Authors:Mori, T, Sun, X, Abe, I.
Deposit date:2023-04-02
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Apo structure of glycosyltransferase LmbT wild type
To Be Published
8IXQ
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BU of 8ixq by Molmil
Structure of glycosyltransferase LmbT in complex with GDP and ergothioneine
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Glycosyltransferase, trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium
Authors:Mori, T, Sun, X, Abe, I.
Deposit date:2023-04-02
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of glycosyltransferase LmbT in complex with GDP and ergothioneine
To Be Published
8J5H
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BU of 8j5h by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase, NITRATE ION
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
To Be Published
8K3H
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BU of 8k3h by Molmil
Cryo-EM structure of PseP with NAD at 2.86 angstrom resolution
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PseP
Authors:Mori, T, Awakawa, T, Adachi, N, Abe, I.
Deposit date:2023-07-15
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Cryo-EM structure of PseP with NAD at 2.86 angstrom resolution
To Be Published
8K3I
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BU of 8k3i by Molmil
Cryo-EM structure of PseP apo
Descriptor: PseP
Authors:Mori, T, Awakawa, T, Adachi, N, Abe, I.
Deposit date:2023-07-15
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Cryo-EM structure of PseP apo
To Be Published
8KDL
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BU of 8kdl by Molmil
Crystal structure of LmbF in complex with PLP
Descriptor: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, GLYCEROL
Authors:Mori, T, Lyu, S, Kadlcik, S, Abe, I.
Deposit date:2023-08-09
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of LmbF in complex with PLP
To Be Published
8KDK
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BU of 8kdk by Molmil
Crystal structure of CcbF in complex with PLP
Descriptor: CcbF
Authors:Mori, T, Lyu, S, Kadlcik, S, Abe, I.
Deposit date:2023-08-09
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of CcbF in complex with PLP
To Be Published
6KSV
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BU of 6ksv by Molmil
Crystal structure of SurE with D-Leu
Descriptor: Alpha/beta hydrolase, D-LEUCINE, S-(2-acetamidoethyl) (2R)-2-azanyl-4-methyl-pentanethioate, ...
Authors:Zhai, R, Mori, T, Abe, I.
Deposit date:2019-08-26
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Heterochiral coupling in non-ribosomal peptide macrolactamization
Nat Catal, 2020

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數據於2024-10-16公開中

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