Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 results

6BIC
DownloadVisualize
BU of 6bic by Molmil
2.25 A resolution structure of Norovirus 3CL protease in complex with a triazole-based macrocyclic inhibitor
Descriptor: (phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate, 3C-like protease
Authors:Lovell, S, Battaile, K.P, Mehzabeen, N, Kankanamalage, A.C.G, Weerawarna, P.M, Rathnayake, A.D, Kim, Y, Chang, K.O, Groutas, W.C.
Deposit date:2017-11-01
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Putative structural rearrangements associated with the interaction of macrocyclic inhibitors with norovirus 3CL protease.
Proteins, 87, 2019
6FUI
DownloadVisualize
BU of 6fui by Molmil
Complement factor D in complex with the inhibitor 3-((3-((3-(aminomethyl)phenyl)amino)-1H-pyrazolo[3,4-d]pyrimidin-4-yl)amino)phenol
Descriptor: (1~{R},2~{S})-2-[[4-[[3-(aminomethyl)phenyl]amino]quinazolin-2-yl]amino]cyclohexane-1-carboxylic acid, Complement factor D
Authors:Mac Sweeney, A, Ostermann, N, Vulpetti, A, Maibaum, J, Erbel, P, Lorthiois, E, Yoon, T, Randl, S, Ruedisser, S.
Deposit date:2018-02-27
Release date:2018-06-06
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Discovery and Design of First Benzylamine-Based Ligands Binding to an Unlocked Conformation of the Complement Factor D.
ACS Med Chem Lett, 9, 2018
5V3X
DownloadVisualize
BU of 5v3x by Molmil
Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM1
Descriptor: Polyketide synthase Pks13 (Termination polyketide synthase), ethyl 5-hydroxy-4-[(4-methylpiperidin-1-yl)methyl]-2-phenyl-1-benzofuran-3-carboxylate
Authors:Aggarwal, A, Sacchettini, J.C.
Deposit date:2017-03-08
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.936 Å)
Cite:Development of a Novel Lead that Targets M. tuberculosis Polyketide Synthase 13.
Cell, 170, 2017
4JI5
DownloadVisualize
BU of 4ji5 by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ...
Authors:Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
6BIB
DownloadVisualize
BU of 6bib by Molmil
1.95 A resolution structure of Norovirus 3CL protease in complex with a triazole-based macrocyclic inhibitor
Descriptor: 3C-like protease, benzyl [(9S,12S,15S)-12-(cyclohexylmethyl)-9-(hydroxymethyl)-6,11,14-trioxo-1,5,10,13,18,19-hexaazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate
Authors:Lovell, S, Battaile, K.P, Mehzabeen, N, Kankanamalage, A.C.G, Weerawarna, P.M, Rathnayake, A.D, Kim, Y, Chang, K.O, Groutas, W.C.
Deposit date:2017-11-01
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Putative structural rearrangements associated with the interaction of macrocyclic inhibitors with norovirus 3CL protease.
Proteins, 87, 2019
5TYG
DownloadVisualize
BU of 5tyg by Molmil
DNA Polymerase Mu Product Complex, 10 mM Mg2+ (960 min)
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Jamsen, J.A, Wilson, S.H.
Deposit date:2016-11-19
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.726 Å)
Cite:Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun, 8, 2017
6FXE
DownloadVisualize
BU of 6fxe by Molmil
BBE31 from Lyme disease agent Borrelia (Borreliella) burgdorferi playing a vital role in successful colonization of the mammalian host
Descriptor: GLUTATHIONE, Putative surface protein
Authors:Brangulis, K, Akopjana, I, Petrovskis, I, Kazaks, A, Tars, K.
Deposit date:2018-03-08
Release date:2019-03-20
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:BBE31 from the Lyme disease agent Borrelia burgdorferi, known to play an important role in successful colonization of the mammalian host, shows the ability to bind glutathione.
Biochim Biophys Acta Gen Subj, 1864, 2019
4U6W
DownloadVisualize
BU of 4u6w by Molmil
HsMetAP (F220M) in complex with 1-amino-2-propylpentyl]phosphonic acid
Descriptor: COBALT (II) ION, GLYCEROL, Methionine aminopeptidase 1, ...
Authors:Arya, T, Addlagatta, A.
Deposit date:2014-07-30
Release date:2015-03-25
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Identification of the Molecular Basis of Inhibitor Selectivity between the Human and Streptococcal Type I Methionine Aminopeptidases
J.Med.Chem., 58, 2015
4U71
DownloadVisualize
BU of 4u71 by Molmil
HsMetAP(F309M) IN COMPLEX WITH 1- amino(cyclohexyl)methy)phosphonic acid
Descriptor: COBALT (II) ION, GLYCEROL, Methionine aminopeptidase 1, ...
Authors:Arya, T, Addlagatta, A.
Deposit date:2014-07-30
Release date:2015-03-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of the Molecular Basis of Inhibitor Selectivity between the Human and Streptococcal Type I Methionine Aminopeptidases
J.Med.Chem., 58, 2015
5FI3
DownloadVisualize
BU of 5fi3 by Molmil
HETEROYOHIMBINE SYNTHASE THAS1 FROM CATHARANTHUS ROSEUS - COMPLEX WITH NADP+
Descriptor: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Tetrahydroalstonine synthase, ...
Authors:Stavrinides, A, Tatsis, E.C, Caputi, L, Foureau, E, Stevenson, C.E.M, Lawson, D.M, Courdavault, V, O'Connor, S.E.
Deposit date:2015-12-22
Release date:2016-07-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structural investigation of heteroyohimbine alkaloid synthesis reveals active site elements that control stereoselectivity.
Nat Commun, 7, 2016
6FZ8
DownloadVisualize
BU of 6fz8 by Molmil
Crystal Structure of lipase from Geobacillus stearothermophilus T6 methanol stable variant L184F/A187F
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Gihaz, S, Kanteev, M, Pazy, Y, Fishman, A.
Deposit date:2018-03-14
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Filling the Void: Introducing Aromatic Interactions into Solvent Tunnels To Enhance Lipase Stability in Methanol.
Appl.Environ.Microbiol., 84, 2018
6FZD
DownloadVisualize
BU of 6fzd by Molmil
Crystal Structure of lipase from Geobacillus stearothermophilus T6 variant L184F/A187F/L360F
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Gihaz, S, Kanteev, M, Pazy, Y, Fishman, A.
Deposit date:2018-03-14
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Filling the Void: Introducing Aromatic Interactions into Solvent Tunnels To Enhance Lipase Stability in Methanol.
Appl.Environ.Microbiol., 84, 2018
5U1R
DownloadVisualize
BU of 5u1r by Molmil
Structure of human MR1-diclofenac in complex with human MAIT A-F7 TCR
Descriptor: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, ACETATE ION, Beta-2-microglobulin, ...
Authors:Keller, A.N, Rossjohn, J.
Deposit date:2016-11-28
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Drugs and drug-like molecules can modulate the function of mucosal-associated invariant T cells.
Nat. Immunol., 18, 2017
5D8M
DownloadVisualize
BU of 5d8m by Molmil
Crystal structure of the metagenomic carboxyl esterase MGS0156
Descriptor: Metagenomic carboxyl esterase MGS0156
Authors:Cui, H, Nocek, B, Tchigvintsev, A, Popovic, A, Savchenko, A, Joachimiak, A, Yakunin, A.
Deposit date:2015-08-17
Release date:2016-10-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of esterase (MGS0156)
To Be Published
5HGR
DownloadVisualize
BU of 5hgr by Molmil
Structure of Anabaena (Nostoc) sp. PCC 7120 Orange Carotenoid Protein binding canthaxanthin
Descriptor: Orange Carotenoid Protein (OCP), beta,beta-carotene-4,4'-dione
Authors:Sutter, M, Leverenz, R.L, Kerfeld, C.A.
Deposit date:2016-01-08
Release date:2016-11-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120.
Plant Physiol., 171, 2016
5DAI
DownloadVisualize
BU of 5dai by Molmil
Proliferating cell nuclear antigen homolog 1 bound to FEN-1 peptide
Descriptor: C-terminus of FEN-1 protein, DNA polymerase sliding clamp 1, SULFATE ION
Authors:Ladner, J.E, Altieri, A.S, Kelman, Z.
Deposit date:2015-08-20
Release date:2016-05-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp.
Nucleic Acids Res., 44, 2016
1M5L
DownloadVisualize
BU of 1m5l by Molmil
Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal
Descriptor: modified HIV-1 packaging signal stem-loop 1 RNA
Authors:Gallego, J, Greatorex, J, Varani, G, Lever, A.
Deposit date:2002-07-09
Release date:2002-09-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal
J.Mol.Biol., 322, 2002
3LZU
DownloadVisualize
BU of 3lzu by Molmil
Crystal Structure of a Nelfinavir Resistant HIV-1 CRF01_AE Protease variant (N88S) in Complex with the Protease Inhibitor Darunavir.
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, ACETATE ION, HIV-1 protease
Authors:Schiffer, C.A, Bandaranayake, R.M.
Deposit date:2010-03-01
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The Effect of Clade-Specific Sequence Polymorphisms on HIV-1 Protease Activity and Inhibitor Resistance Pathways.
J.Virol., 84, 2010
6BO8
DownloadVisualize
BU of 6bo8 by Molmil
Cryo-EM structure of human TRPV6 in nanodiscs
Descriptor: Transient receptor potential cation channel subfamily V member 6
Authors:McGoldrick, L.L, Singh, A.K, Saotome, K, Yelshanskaya, M.V, Twomey, E.C, Grassucci, R.A, Sobolevsky, A.I.
Deposit date:2017-11-18
Release date:2017-12-20
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Opening of the human epithelial calcium channel TRPV6.
Nature, 553, 2018
1M7D
DownloadVisualize
BU of 1m7d by Molmil
Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide
Descriptor: alpha-L-rhamnopyranose-(1-3)-alpha-L-Olivopyranose-(1-3)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, heavy chain of the monoclonal antibody Fab SYA/J6, light chain of the monoclonal antibody Fab SYA/J6
Authors:Vyas, N.K, Vyas, M.N, Chervenak, M.C, Johnson, M.A, Pinto, B.M, Bundle, D.R, Quiocho, F.A.
Deposit date:2002-07-19
Release date:2003-07-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics
Biochemistry, 41, 2002
4ZJL
DownloadVisualize
BU of 4zjl by Molmil
Crystal structure of AcrB in complex with antibiotic in P21 space group
Descriptor: DODECYL-BETA-D-MALTOSIDE, ERYTHROMYCIN A, Multidrug efflux pump subunit AcrB, ...
Authors:Ababou, A, Koronakis, V.
Deposit date:2015-04-29
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.47 Å)
Cite:Structures of Gate Loop Variants of the AcrB Drug Efflux Pump Bound by Erythromycin Substrate.
Plos One, 11, 2016
6HH3
DownloadVisualize
BU of 6hh3 by Molmil
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with ADP-HPD
Descriptor: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, ADP-ribosylhydrolase like 2, GLYCEROL, ...
Authors:Ariza, A.
Deposit date:2018-08-24
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
6G37
DownloadVisualize
BU of 6g37 by Molmil
Crystal structure of haspin in complex with 5-fluorotubercidin
Descriptor: 5-fluorotubercidin, PHOSPHATE ION, Serine/threonine-protein kinase haspin
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
3M1N
DownloadVisualize
BU of 3m1n by Molmil
Crystal structure of Human Sonic Hedgehog N-terminal domain
Descriptor: SULFATE ION, Sonic hedgehog protein, ZINC ION
Authors:Boriack-Sjodin, P.A, Pepinsky, R.B, Garber, E.A, Silvian, L.F.
Deposit date:2010-03-05
Release date:2010-03-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mapping sonic hedgehog-receptor interactions by steric interference.
J.Biol.Chem., 275, 2000
6I0I
DownloadVisualize
BU of 6i0i by Molmil
Structure of the streptomyces subtilisin and TAMP inhibitor (SSTI)
Descriptor: Transglutaminase-activating metalloprotease inhibitor
Authors:Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A.
Deposit date:2018-10-26
Release date:2019-09-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The N-terminal peptide of the transglutaminase-activating metalloprotease inhibitor from Streptomyces mobaraensis accommodates both inhibition and glutamine cross-linking sites.
Febs J., 287, 2020

224931

건을2024-09-11부터공개중

PDB statisticsPDBj update infoContact PDBjnumon