Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 件

7KCG
DownloadVisualize
BU of 7kcg by Molmil
Salivary protein from Culex quiquefasciatus that belongs to the Cysteine and Tryptophan-Rich (CWRC) family
分子名称: 16 kDa salivary peptide, FORMIC ACID
著者Garboczi, N.D, Gittis, A.G, Kern, O, Martin-Martin, I, Calvo, E.
登録日2020-10-05
公開日2021-06-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献The structures of two salivary proteins from the West Nile vector Culex quinquefasciatus reveal a beta-trefoil fold with putative sugar binding properties
Curr Res Struct Biol, 3, 2021
8UC4
DownloadVisualize
BU of 8uc4 by Molmil
Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
分子名称: DI(HYDROXYETHYL)ETHER, POLYETHYLENE GLYCOL (N=34), Peptidyl-prolyl cis-trans isomerase F, ...
著者Kreitler, D.F, Rangwala, A.M, Seeliger, M.A.
登録日2023-09-25
公開日2024-08-07
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
To Be Published
7MAJ
DownloadVisualize
BU of 7maj by Molmil
HIV-1 Protease (I84V) in Complex with PU6 (LR3-66)
分子名称: Protease, SULFATE ION, diethyl [(4-{(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate
著者Lockbaum, G.J, Schiffer, C.A.
登録日2021-03-31
公開日2022-04-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.871 Å)
主引用文献HIV-1 Protease in Complex with ligands
To Be Published
6S6T
DownloadVisualize
BU of 6s6t by Molmil
Structure of Azospirillum brasilense Glutamate Synthase in a4b3 oligomeric state
分子名称: FE3-S4 CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Chaves-Sanjuan, A, Bolognesi, M.
登録日2019-07-03
公開日2019-09-11
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM Structures of Azospirillum brasilense Glutamate Synthase in Its Oligomeric Assemblies.
J.Mol.Biol., 431, 2019
5XCY
DownloadVisualize
BU of 5xcy by Molmil
Structure of the cellobiohydrolase Cel6A from Phanerochaete chrysosporium at 1.2 angstrom
分子名称: Glucanase
著者Tachioka, M, Nakamura, A, Ishida, T, Igarashi, K, Samejima, M.
登録日2017-03-24
公開日2017-07-26
実験手法X-RAY DIFFRACTION (1.199 Å)
主引用文献Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium
Acta Crystallogr F Struct Biol Commun, 73, 2017
7M9N
DownloadVisualize
BU of 7m9n by Molmil
HIV-1 Protease (I84V) in Complex with LR3-68
分子名称: Protease, SULFATE ION, diethyl [(4-{(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-[{4-[(1S)-1-hydroxyethyl]benzene-1-sulfonyl}(2-methylpropyl)amino]butyl}phenoxy)methyl]phosphonate
著者Lockbaum, G.J, Schiffer, C.A.
登録日2021-03-31
公開日2022-04-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献HIV-1 Protease in Complex with ligands
To Be Published
6ELT
DownloadVisualize
BU of 6elt by Molmil
C-terminal domain of MdPPO1 upon self-cleavage (Ccleaved-domain)
分子名称: CALCIUM ION, Polyphenol oxidase, chloroplastic
著者Kampatsikas, I, Bijelic, A, Pretzler, M, Rompel, A.
登録日2017-09-29
公開日2019-03-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A Peptide-Induced Self-Cleavage Reaction Initiates the Activation of Tyrosinase.
Angew.Chem.Int.Ed.Engl., 58, 2019
4Y5E
DownloadVisualize
BU of 4y5e by Molmil
Endothiapepsin in complex with fragment 268
分子名称: (2R)-N-(trans-4-methylcyclohexyl)tetrahydrofuran-2-carboxamide, ACETATE ION, DIMETHYL SULFOXIDE, ...
著者Wang, X, Heine, A, Klebe, G.
登録日2015-02-11
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.116 Å)
主引用文献Crystallographic Fragment Sreening of an Entire Library
to be published
6S72
DownloadVisualize
BU of 6s72 by Molmil
Crystal Structure of the Homospermidine Synthase (HSS) variant W229A from Blastochloris viridis in Complex with NAD and PUT
分子名称: 1,4-DIAMINOBUTANE, Homospermidine synthase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Helfrich, F, Scheidig, A.J.
登録日2019-07-04
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural and catalytic characterization of Blastochloris viridis and Pseudomonas aeruginosa homospermidine synthases supports the essential role of cation-pi interaction.
Acta Crystallogr D Struct Biol, 77, 2021
7MAN
DownloadVisualize
BU of 7man by Molmil
HIV-1 Protease (I84V) in Complex with PU9 (LR2-80)
分子名称: Protease, SULFATE ION, diethyl [(4-{(2S,3R)-4-{[(2H-1,3-benzodioxol-5-yl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate
著者Lockbaum, G.J, Schiffer, C.A.
登録日2021-03-31
公開日2022-04-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献HIV-1 Protease (I84V) in Complex with PU9 (LR2-80)
To Be Published
4Y5N
DownloadVisualize
BU of 4y5n by Molmil
Endothiapepsin in complex with fragment 337
分子名称: 1,2-ETHANEDIOL, 6-[(1S)-1-(azepan-1-yl)ethyl]-N,N-dimethyl-1,3,5-triazine-2,4-diamine, ACETATE ION, ...
著者Fu, K, Heine, A, Klebe, G.
登録日2015-02-11
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Crystallographic Fragment Screening of an Entire Library
To Be Published
6EMZ
DownloadVisualize
BU of 6emz by Molmil
Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with circular intermediate DNA (CI5-DNA)
分子名称: DNA (44-MER), Int protein
著者Rubio-Cosials, A, Barabas, O.
登録日2017-10-04
公開日2018-04-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.
Cell, 173, 2018
5KGQ
DownloadVisualize
BU of 5kgq by Molmil
NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi
分子名称: Uncharacterized protein
著者D'Andrea, E.D, Retel, J.S, Diehl, A, Schmieder, P, Oschkinat, H, Pires, J.R.
登録日2016-06-13
公開日2017-07-05
最終更新日2024-06-12
実験手法SOLUTION NMR
主引用文献NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi.
J.Struct.Biol., 213, 2021
6IL7
DownloadVisualize
BU of 6il7 by Molmil
Structure of Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) C503A mutant
分子名称: SULFATE ION, Thioredoxin reductase/glutathione-related protein
著者Toh, Y.K, Shin, J, Balakrishna, A.M, Eisenhaber, F, Eisenhaber, B, Gruber, G.
登録日2018-10-17
公開日2019-05-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Effect of the additional cysteine 503 of vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) and the mechanism of AhpF and subunit C assembling.
Free Radic. Biol. Med., 138, 2019
6S7L
DownloadVisualize
BU of 6s7l by Molmil
Arbitrium receptor from a Bacillus subtilis Katmira33 phage
分子名称: Arbitrium receptor, GLY-ILE-VAL-ARG-GLY-ALA, GLYCEROL
著者Marina, A, Gallego del Sol, F.
登録日2019-07-05
公開日2021-04-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Insights into the mechanism of action of the arbitrium communication system in SPbeta phages.
Nat Commun, 13, 2022
7UGT
DownloadVisualize
BU of 7ugt by Molmil
Crystal structure of hyperfolder fluorescent protein FOLD6
分子名称: FOLD6
著者Campbell, B.C, Liu, C.F, Petsko, G.A.
登録日2022-03-25
公開日2022-10-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Chemically stable fluorescent proteins for advanced microscopy.
Nat.Methods, 19, 2022
5JZR
DownloadVisualize
BU of 5jzr by Molmil
Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles
分子名称: Coat protein
著者Jaudzems, K, Andreas, L.B, Stanek, J, Lalli, D, Bertarello, A, Le Marchand, T, Cala-De Paepe, D, Kotelovica, S, Akopjana, I, Knott, B, Wegner, S, Engelke, F, Lesage, A, Emsley, L, Tars, K, Herrmann, T, Pintacuda, G.
登録日2016-05-17
公開日2016-08-10
最終更新日2024-06-19
実験手法SOLID-STATE NMR
主引用文献Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.
Proc.Natl.Acad.Sci.USA, 113, 2016
7UGR
DownloadVisualize
BU of 7ugr by Molmil
Crystal structure of hyperfolder YFP
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Hyperfolder yellow fluorescent protein, ...
著者Campbell, B.C, Liu, C.F, Petsko, G.A.
登録日2022-03-25
公開日2022-10-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Chemically stable fluorescent proteins for advanced microscopy.
Nat.Methods, 19, 2022
5JXV
DownloadVisualize
BU of 5jxv by Molmil
Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)
分子名称: Immunoglobulin G-binding protein G
著者Andreas, L.B, Jaudzems, K, Stanek, J, Lalli, D, Bertarello, A, Le Marchand, T, Cala-De Paepe, D, Kotelovica, S, Akopjana, I, Knott, B, Wegner, S, Engelke, F, Lesage, A, Emsley, L, Tars, K, Herrmann, T, Pintacuda, G.
登録日2016-05-13
公開日2016-08-10
最終更新日2024-06-19
実験手法SOLID-STATE NMR
主引用文献Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.
Proc.Natl.Acad.Sci.USA, 113, 2016
4REX
DownloadVisualize
BU of 4rex by Molmil
Crystal structure of the first WW domain of human YAP2 isoform
分子名称: SULFATE ION, Yorkie homolog
著者Camara-Artigas, A.
登録日2014-09-24
公開日2015-08-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the first WW domain of human YAP2 isoform.
J.Struct.Biol., 191, 2015
5CE9
DownloadVisualize
BU of 5ce9 by Molmil
structure of tyrosinase from walnut (Juglans regia)
分子名称: COPPER (II) ION, OXYGEN ATOM, Polyphenol oxidase, ...
著者Bijelic, A, Pretzler, M, Zekiri, F, Rompel, A.
登録日2015-07-06
公開日2015-10-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Structure of a Plant Tyrosinase from Walnut Leaves Reveals the Importance of """"Substrate-Guiding Residues"""" for Enzymatic Specificity.
Angew.Chem.Int.Ed.Engl., 54, 2015
6E90
DownloadVisualize
BU of 6e90 by Molmil
Ternary complex of human glycerol 3-phosphate dehydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, CALCIUM ION, ...
著者Mydy, L.S, Gulick, A.M.
登録日2018-07-31
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies.
Biochemistry, 58, 2019
4Y8E
DownloadVisualize
BU of 4y8e by Molmil
PA3825-EAL Ca-Apo Structure
分子名称: CALCIUM ION, PA3825 EAL
著者Horrell, S, Bellini, D, Strange, R, Wagner, A, Walsh, M.
登録日2015-02-16
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Structure of PA3825 from P. aeruginosa bound to cyclic di-GMP and pGpG: new insights for a potential three-metal catalytic mechanism of EAL domains
To Be Published
4B3R
DownloadVisualize
BU of 4b3r by Molmil
Crystal structure of the 30S ribosome in complex with compound 30
分子名称: (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-4,6-O-[(1R)-3-phenylpropylidene]-alpha-D-glucopyranoside, 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Ng, C.L, Lang, K, Shcherbakov, D, Matt, T, Perez-Fernandez, D, Patak, R, Meyer, M, Duscha, S, Akbergenov, R, Boukari, H, Freihofer, P, Kudyba, I, Reddy, M.S.K, Nandurikar, R.S, Ramakrishnan, V, Vasella, A, Bottger, E.C.
登録日2012-07-26
公開日2013-08-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
7MAH
DownloadVisualize
BU of 7mah by Molmil
HIV-1 Protease (I84V) in Complex with PU4 (LR2-78)
分子名称: Protease, SULFATE ION, diethyl [(4-{(2S,3R)-4-{[(2H-1,3-benzodioxol-5-yl)sulfonyl][(2S)-2-methylbutyl]amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate
著者Lockbaum, G.J, Schiffer, C.A.
登録日2021-03-31
公開日2022-04-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.881 Å)
主引用文献HIV-1 Protease (I84V) in Complex with PU4 (LR2-78)
To Be Published

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon