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6A0S
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BU of 6a0s by Molmil
Homoserine dehydrogenase from Thermus thermophilus HB8 complexed with HSE and NADPH
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FORMIC ACID, GLYCEROL, ...
著者Akai, S, Ikushiro, H, Sawai, T, Yano, T, Kamiya, N, Miyahara, I.
登録日2018-06-06
公開日2018-11-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of homoserine dehydrogenase complexed with l-homoserine and NADPH in a closed form
J. Biochem., 165, 2019
6A0U
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BU of 6a0u by Molmil
Homoserine dehydrogenase K195A mutant from Thermus thermophilus HB8 complexed with HSE and NADP+
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FORMIC ACID, GLYCEROL, ...
著者Akai, S, Ikushiro, H, Sawai, T, Yano, T, Kamiya, N, Miyahara, I.
登録日2018-06-06
公開日2018-11-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献The crystal structure of homoserine dehydrogenase complexed with l-homoserine and NADPH in a closed form
J. Biochem., 165, 2019
6A0T
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BU of 6a0t by Molmil
Homoserine dehydrogenase K99A mutant from Thermus thermophilus HB8 complexed with HSE and NADP+
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FORMIC ACID, GLYCEROL, ...
著者Akai, S, Ikushiro, H, Sawai, T, Yano, T, Kamiya, N, Miyahara, I.
登録日2018-06-06
公開日2018-11-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献The crystal structure of homoserine dehydrogenase complexed with l-homoserine and NADPH in a closed form
J. Biochem., 165, 2019
5X9Y
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BU of 5x9y by Molmil
Crystal structure of the ATPase domain from bacterial mismatch repair endonuclease Aquifex aeolicus MutL.
分子名称: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL
著者Fukui, K, Yano, T.
登録日2017-03-10
公開日2017-08-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.443 Å)
主引用文献Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus
Biochim. Biophys. Acta, 1865, 2017
5Z41
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BU of 5z41 by Molmil
Aquifex aeolicus MutL endonuclease domain with a single zinc ion.
分子名称: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, MAGNESIUM ION, ...
著者Fukui, K, Yano, T.
登録日2018-01-10
公開日2018-04-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus
FEBS Lett., 592, 2018
5Z42
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BU of 5z42 by Molmil
Aquifex aeolicus MutL endonuclease domain with three zinc ions.
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
著者Fukui, K, Yano, T.
登録日2018-01-10
公開日2018-04-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus
FEBS Lett., 592, 2018
5YTQ
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BU of 5ytq by Molmil
Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
分子名称: LANTHANUM (III) ION, TTHA0139
著者Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R.
登録日2017-11-19
公開日2018-11-21
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.393 Å)
主引用文献Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
To Be Published
5YTP
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BU of 5ytp by Molmil
Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8
分子名称: TTHA0139
著者Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R.
登録日2017-11-19
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.457 Å)
主引用文献Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8
To Be Published
6L9C
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BU of 6l9c by Molmil
Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4
分子名称: COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
著者Murakawa, T, Kurihara, K, Shoji, M, Shibazaki, C, Sunami, T, Tamada, T, Yano, N, Yamada, T, Kusaka, K, Suzuki, M, Shigeta, Y, Kuroki, R, Hayashi, H, Yano, Y, Tanizawa, K, Adachi, M, Okajima, T.
登録日2019-11-08
公開日2020-04-29
最終更新日2023-11-22
実験手法NEUTRON DIFFRACTION (1.14 Å), X-RAY DIFFRACTION
主引用文献Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.
Proc.Natl.Acad.Sci.USA, 117, 2020
8J6G
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BU of 8j6g by Molmil
Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
分子名称: 2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Okajima, T.
登録日2023-04-25
公開日2023-09-20
実験手法NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
主引用文献Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor
Acs Catalysis, 2023
7F8K
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BU of 7f8k by Molmil
Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T.
登録日2021-07-02
公開日2021-09-08
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase
Acta Crystallogr.,Sect.F, 77, 2021
7ED9
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BU of 7ed9 by Molmil
Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01764154 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7ED6
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BU of 7ed6 by Molmil
Crystal structure of Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-01-11
実験手法X-RAY DIFFRACTION (1.92850327 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7YNH
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BU of 7ynh by Molmil
Catalytic intermediate of copper amine oxidase determined by serial femtosecond X-ray crystallography using a single-flow liquid jet system
分子名称: COPPER (II) ION, PHENYLACETALDEHYDE, Phenylethylamine oxidase, ...
著者Murakawa, T, Okajima, T.
登録日2022-07-31
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Serial femtosecond X-ray crystallography of an anaerobically formed catalytic intermediate of copper amine oxidase.
Acta Crystallogr D Struct Biol, 78, 2022
6FE4
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BU of 6fe4 by Molmil
Crystal structure of the complex between Shiga toxin Stx2 B subunit and neutralising Nb113
分子名称: Nb113, Shiga-like toxin 2 subunit B
著者Bernedo, R, Muyldermans, S, Sterckx, Y.G.J.
登録日2017-12-29
公開日2018-03-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment.
Toxins (Basel), 10, 2018
3W8R
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BU of 3w8r by Molmil
Mutant structure of Thermus thermophilus HB8 uridine-cytidine kinase
分子名称: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Uridine kinase
著者Tomoike, F, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2013-03-21
公開日2014-03-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Indispensable residue for uridine binding in the uridine-cytidine kinase family.
Biochem Biophys Rep, 11, 2017
2CB3
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BU of 2cb3 by Molmil
Crystal structure of peptidoglycan recognition protein-LE in complex with tracheal cytotoxin (monomeric diaminopimelic acid-type peptidoglycan)
分子名称: GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA, GLYCEROL, PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE
著者Lim, J.-H, Kim, M.-S, Oh, B.-H.
登録日2005-12-29
公開日2006-01-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Preferential Recognition of Diaminopimelic Acid-Type Peptidoglycan by a Subset of Peptidoglycan Recognition Proteins
J.Biol.Chem., 281, 2006
5X79
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BU of 5x79 by Molmil
Human GST Pi conjugated with novel inhibitor, GS-ESF
分子名称: (2S)-2-azanyl-5-[[(2R)-3-(2-fluorosulfonylethylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Glutathione S-transferase P
著者Tomoike, F, Shishido, Y, Fukui, K, Kimura, Y, Abe, H.
登録日2017-02-24
公開日2017-09-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP1-1).
Chem. Commun. (Camb.), 53, 2017
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