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8OKV
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BU of 8okv by Molmil
lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl
Descriptor: CYANOCOBALAMIN, Putative surface layer protein
Authors:Javier Abellon-Ruiz, J, van den Berg, B, Jana, K, Kleinekathofer, U, Silale, A, Frey, A.M, Basle, A, Trost, M.
Deposit date:2023-03-29
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
5K9P
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BU of 5k9p by Molmil
Ser20 phosphorylated ubiquitin
Descriptor: Polyubiquitin-B
Authors:Huguenin-Dezot, N, Chin, J.W.
Deposit date:2016-06-01
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Synthesis of Isomeric Phosphoubiquitin Chains Reveals that Phosphorylation Controls Deubiquitinase Activity and Specificity.
Cell Rep, 16, 2016
5UQV
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BU of 5uqv by Molmil
USP7 in complex with GNE6640 (4-(2-amino-4-ethyl-5-(1H-indazol-5-yl)pyridin-3-yl)phenol)
Descriptor: 4-[2-amino-4-ethyl-5-(1H-indazol-5-yl)pyridin-3-yl]phenol, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Murray, J.M, Rouge, L.
Deposit date:2017-02-08
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:USP7 small-molecule inhibitors interfere with ubiquitin binding.
Nature, 550, 2017
5UQX
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BU of 5uqx by Molmil
USP7 in complex with GNE6776 (6'-amino-4'-ethyl-5'-(4-hydroxyphenyl)-N-methyl-[3,3'-bipyridine]-6-carboxamide)
Descriptor: 6'-amino-4'-ethyl-5'-(4-hydroxyphenyl)-N-methyl[3,3'-bipyridine]-6-carboxamide, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Murray, J.M, Rouge, L.
Deposit date:2017-02-08
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:USP7 small-molecule inhibitors interfere with ubiquitin binding.
Nature, 550, 2017
8AA4
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BU of 8aa4 by Molmil
SusC components of the dextran utilisation system (utilisome)
Descriptor: SusC homolog
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA1
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BU of 8aa1 by Molmil
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12
Descriptor: MAGNESIUM ION, SusC homolog, SusD homolog, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA0
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BU of 8aa0 by Molmil
Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12
Descriptor: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA2
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BU of 8aa2 by Molmil
Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25
Descriptor: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA3
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BU of 8aa3 by Molmil
Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25
Descriptor: MAGNESIUM ION, SusC homolog, SusD homolog, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8A9Y
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BU of 8a9y by Molmil
Substrate-free levan utilisation machinery (utilisome)
Descriptor: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
7ZNR
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BU of 7znr by Molmil
Inactive D62N mutant of BT1760 Endo-acting levanase from Bacteroides thetaiotaomicron VPI-5482
Descriptor: SULFATE ION, Sucrose-6-phosphate hydrolase, beta-D-fructofuranose-(2-6)-beta-D-fructofuranose, ...
Authors:Basle, A, Bolam, D.
Deposit date:2022-04-21
Release date:2023-06-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
7ZNS
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BU of 7zns by Molmil
Inactive D62N mutant of BT1760 Endo-acting levanase from Bacteroides thetaiotaomicron VPI-5482
Descriptor: Glycoside hydrolase family 32, SULFATE ION, beta-D-fructofuranose-(2-6)-beta-D-fructofuranose, ...
Authors:Basle, A, Bolam, D.
Deposit date:2022-04-21
Release date:2023-06-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AH3
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BU of 8ah3 by Molmil
DG04279 glycoside hydrolase family 172
Descriptor: CALCIUM ION, DG02479 GH127
Authors:Al-Jourani, O, Lowe, E.C, Basle, A.
Deposit date:2022-07-20
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mining the human gut microbiome identifies mycobacterial D-arabinan degrading enzymes
To Be Published
8BMZ
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BU of 8bmz by Molmil
Bacteroides thetaiotaomicron surface lipoprotein BT1954 bound to adenosylcobalamin
Descriptor: Adenosylcobalamin, CHLORIDE ION, Putative surface layer protein, ...
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-08-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BMY
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BU of 8bmy by Molmil
Bacteroides thetaiotaomicron surface lipoprotein bound to cyanocobalamin
Descriptor: CHLORIDE ION, CYANOCOBALAMIN, Putative surface layer protein, ...
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-08-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BLW
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BU of 8blw by Molmil
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
Descriptor: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2022-11-10
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BN0
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BU of 8bn0 by Molmil
Bacteroides thetaiotaomicron surface protein BT1954 bound to
Descriptor: CHLORIDE ION, COB(II)INAMIDE, CYANIDE ION, ...
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-08-16
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BMX
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BU of 8bmx by Molmil
Bacteroides thetaiotaomicron B12 TonB dependent transporter in complex with a surface lipoprotein
Descriptor: Putative TonB-linked outer membrane receptor, YncE family protein
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-09-20
Method:X-RAY DIFFRACTION (3.72 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
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BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P98
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BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BM0
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BU of 8bm0 by Molmil
Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
6EON
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BU of 6eon by Molmil
Galactanase BT0290
Descriptor: Beta-galactosidase, CALCIUM ION, alpha-D-galactopyranose
Authors:Basle, A, Munoz, J, Gilbert, H.
Deposit date:2017-10-10
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUI
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BU of 6eui by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactose
Descriptor: Beta-glucanase, CALCIUM ION, beta-D-galactopyranose
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUJ
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BU of 6euj by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
Descriptor: Beta-glucanase
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUF
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BU of 6euf by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
Descriptor: Beta-glucanase, alpha-L-arabinofuranose-(1-3)-[alpha-L-arabinofuranose-(1-4)][beta-D-glucopyranuronic acid-(1-6)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose, alpha-L-rhamnopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-6)-[alpha-L-arabinofuranose-(1-3)][alpha-L-arabinofuranose-(1-4)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018

 

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