2ZM5
| Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | Descriptor: | MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe) | Authors: | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | Deposit date: | 2008-04-11 | Release date: | 2009-04-14 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon Biochemistry, 48, 2009
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2ZU7
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2ZPA
| Crystal Structure of tRNA(Met) Cytidine Acetyltransferase | Descriptor: | ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... | Authors: | Chimnaronk, S, Manita, T, Yao, M, Tanaka, I. | Deposit date: | 2008-07-08 | Release date: | 2009-04-07 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon Embo J., 28, 2009
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2ZDS
| Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2) | Descriptor: | Putative DNA-binding protein | Authors: | Begum, P, Gao, Y.G, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2007-11-27 | Release date: | 2008-12-02 | Last modified: | 2019-10-16 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of SCO6571 from Streptomyces coelicolor A3(2). Protein Pept.Lett., 15, 2008
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3A4K
| Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution | Descriptor: | ACETATE ION, DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), ... | Authors: | Watanabe, N, Sato, C, Takasaki, Y, Tanaka, I. | Deposit date: | 2009-07-09 | Release date: | 2009-10-20 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.17 Å) | Cite: | Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations Acta Crystallogr.,Sect.D, 65, 2009
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2ZXU
| Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | Descriptor: | DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, ... | Authors: | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | Deposit date: | 2009-01-07 | Release date: | 2009-05-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon Biochemistry, 48, 2009
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2ZZF
| Crystal structure of alanyl-tRNA synthetase without oligomerization domain | Descriptor: | Alanyl-tRNA synthetase, ZINC ION | Authors: | Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I. | Deposit date: | 2009-02-10 | Release date: | 2009-07-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | The structure of alanyl-tRNA synthetase with editing domain. Proc.Natl.Acad.Sci.USA, 106, 2009
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3A1R
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3A7W
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3A88
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3A7V
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3A1Y
| The structure of archaeal ribosomal stalk P1/P0 complex | Descriptor: | 50S ribosomal protein P1 (L12P), Acidic ribosomal protein P0 | Authors: | Naganuma, T, Yao, M, Nomura, N, Yu, J, Uchiumi, T, Tanaka, I. | Deposit date: | 2009-04-25 | Release date: | 2009-11-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes J.Biol.Chem., 285, 2010
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3A87
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3A7T
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3VZR
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3VZQ
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3VSE
| Crystal structure of methyltransferase | Descriptor: | Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE | Authors: | Kita, S, Tanaka, Y, Yao, M, Tanaka, I. | Deposit date: | 2012-04-25 | Release date: | 2013-04-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.099 Å) | Cite: | Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus Protein Pept.Lett., 20, 2012
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3VZP
| Crystal structure of PhaB from Ralstonia eutropha | Descriptor: | 1,4-DIETHYLENE DIOXIDE, Acetoacetyl-CoA reductase, GLYCEROL, ... | Authors: | Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2012-10-15 | Release date: | 2013-08-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.792 Å) | Cite: | Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics Appl.Environ.Microbiol., 79, 2013
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3VZS
| Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP | Descriptor: | ACETOACETYL-COENZYME A, Acetoacetyl-CoA reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2012-10-15 | Release date: | 2013-08-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics Appl.Environ.Microbiol., 79, 2013
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3W9V
| Crystal structure of refolded DING protein | Descriptor: | GLYCEROL, PHOSPHATE ION, Phosphate-binding protein | Authors: | Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M. | Deposit date: | 2013-04-17 | Release date: | 2013-10-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.031 Å) | Cite: | Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation. J.SYNCHROTRON RADIAT., 20, 2013
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3W9W
| Crystal structure of DING protein | Descriptor: | DING protein, GLYCEROL, PHOSPHATE ION | Authors: | Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M. | Deposit date: | 2013-04-17 | Release date: | 2013-10-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation. J.SYNCHROTRON RADIAT., 20, 2013
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3WY8
| Crystal Structure of Protease Anisep from Arthrobacter Nicotinovorans | Descriptor: | Serine protease | Authors: | Sone, T, Haraguchi, Y, Kuwahara, A, Ose, T, Takano, M, Abe, A, Tanaka, M, Tanaka, I, Asano, K. | Deposit date: | 2014-08-20 | Release date: | 2015-08-26 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural characterization reveals the keratinolytic activity of an arthrobacter nicotinovorans protease. Protein Pept.Lett., 22, 2015
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3X2O
| Neutron and X-ray joint refined structure of PcCel45A apo form at 298K. | Descriptor: | Endoglucanase V-like protein | Authors: | Nakamura, A, Ishida, T, Kusaka, K, Yamada, T, Tanaka, I, Niimura, N, Samejima, M, Igarashi, K. | Deposit date: | 2014-12-22 | Release date: | 2015-10-07 | Last modified: | 2019-12-18 | Method: | NEUTRON DIFFRACTION (1.5 Å), X-RAY DIFFRACTION | Cite: | "Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography. Sci Adv, 1, 2015
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3X2P
| Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K. | Descriptor: | Endoglucanase V-like protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | Authors: | Nakamura, A, Ishida, T, Kusaka, K, Yamada, T, Tanaka, I, Niimura, N, Samejima, M, Igarashi, K. | Deposit date: | 2014-12-22 | Release date: | 2015-10-14 | Last modified: | 2020-07-29 | Method: | NEUTRON DIFFRACTION (1.518 Å), X-RAY DIFFRACTION | Cite: | "Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography. Sci Adv, 1, 2015
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2CWI
| X-ray crystal structure analysis of recombinant wild-type canine milk lysozyme (apo-type) | Descriptor: | Lysozyme C, milk isozyme, SULFATE ION | Authors: | Akieda, D, Yasui, M, Aizawa, T, Yao, M, Watanabe, N, Tanaka, I, Demura, M, Kawano, K, Nitta, K. | Deposit date: | 2005-06-20 | Release date: | 2006-06-20 | Last modified: | 2018-01-24 | Method: | X-RAY DIFFRACTION (1.941 Å) | Cite: | Construction of an expression system of canine milk lysozyme in the methylotrophic yeast Pichia pastoris To be Published
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