5Z0I
 
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5Z0H
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5Z0G
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3AZO
 | | Crystal structure of puromycin hydrolase | | Descriptor: | Aminopeptidase, SULFATE ION | | Authors: | Matoba, Y, Sugiyama, M. | | Deposit date: | 2011-05-27 | | Release date: | 2011-07-27 | | Last modified: | 2011-09-28 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
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3AZP
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3AZQ
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3WSV
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3WSW
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2ZRR
 | | Crystal structure of an immunity protein that contributes to the self-protection of bacteriocin-producing Enterococcus mundtii 15-1A | | Descriptor: | Mundticin KS immunity protein | | Authors: | Jeon, H.J, Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M. | | Deposit date: | 2008-08-30 | | Release date: | 2009-02-17 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure and mutagenic analysis of a bacteriocin immunity protein, Mun-im
Biochem.Biophys.Res.Commun., 378, 2009
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3VVL
 | | Crystal structure of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway | | Descriptor: | Homoserine O-acetyltransferase | | Authors: | Oda, K, Matoba, Y, Kumagai, T, Noda, M, Sugiyama, M. | | Deposit date: | 2012-07-26 | | Release date: | 2013-03-20 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.81 Å) | | Cite: | Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
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3VVM
 | | Crystal structure of G52A-P55G mutant of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway | | Descriptor: | Homoserine O-acetyltransferase | | Authors: | Oda, K, Matoba, Y, Kumagai, T, Noda, M, Sugiyama, M. | | Deposit date: | 2012-07-26 | | Release date: | 2013-03-20 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
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2ZW7
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2ZW5
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2ZW6
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2ZW4
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3WA6
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3WA7
 | | Crystal structure of selenomethionine-labeled tannase from Lactobacillus plantarum in the orthorhombic crystal | | Descriptor: | ACETATE ION, GLYCEROL, SULFATE ION, ... | | Authors: | Matoba, Y, Tanaka, N, Sugiyama, M. | | Deposit date: | 2013-04-27 | | Release date: | 2013-07-24 | | Last modified: | 2013-11-06 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystallographic and mutational analyses of tannase from Lactobacillus plantarum.
Proteins, 81, 2013
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2ZV6
 | | Crystal structure of human squamous cell carcinoma antigen 1 | | Descriptor: | Serpin B3 | | Authors: | Zheng, B, Matoba, Y, Katagiri, C, Hibino, T, Sugiyama, M. | | Deposit date: | 2008-11-01 | | Release date: | 2009-02-24 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Crystal structure of SCCA1 and insight about the interaction with JNK1
Biochem.Biophys.Res.Commun., 380, 2009
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3X44
 | | Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase | | Descriptor: | (E)-O-(carbamoylamino)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, O-ureido-L-serine synthase | | Authors: | Matoba, Y, Uda, N, Oda, K, Sugiyama, M. | | Deposit date: | 2015-03-13 | | Release date: | 2015-07-29 | | Last modified: | 2022-08-24 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis.
Febs J., 282, 2015
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3X43
 | | Crystal structure of O-ureido-L-serine synthase | | Descriptor: | O-ureido-L-serine synthase, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Matoba, Y, Uda, N, Oda, K, Sugiyama, M. | | Deposit date: | 2015-03-13 | | Release date: | 2015-07-29 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis.
Febs J., 282, 2015
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8ILL
 | | Crystal structure of a highly photostable and bright green fluorescent protein at pH5.6 | | Descriptor: | CHLORIDE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, green fluorescent protein | | Authors: | Ago, H, Ando, R, Hirano, M, Shimozono, S, Miyawaki, A, Yamamoto, M. | | Deposit date: | 2023-03-03 | | Release date: | 2023-10-04 | | Last modified: | 2024-04-24 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | StayGold variants for molecular fusion and membrane-targeting applications.
Nat.Methods, 21, 2024
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8ILK
 | | Crystal structure of a highly photostable and bright green fluorescent protein at pH8.5 | | Descriptor: | CHLORIDE ION, Green FLUORESCENT PROTEIN | | Authors: | Ago, H, Ando, R, Hirano, M, Shimozono, S, Miyawaki, A, Yamamoto, M. | | Deposit date: | 2023-03-03 | | Release date: | 2023-10-04 | | Last modified: | 2024-04-24 | | Method: | X-RAY DIFFRACTION (1.56 Å) | | Cite: | StayGold variants for molecular fusion and membrane-targeting applications.
Nat.Methods, 21, 2024
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8IHL
 | | Overlapping tri-nucleosome | | Descriptor: | DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | Authors: | Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H. | | Deposit date: | 2023-02-23 | | Release date: | 2024-01-17 | | Last modified: | 2024-01-24 | | Method: | ELECTRON MICROSCOPY (7.64 Å) | | Cite: | Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
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6V2K
 | | The nucleosome structure after H2A-H2B exchange | | Descriptor: | CHLORIDE ION, DNA (146-MER), Histone H2A, ... | | Authors: | Arimura, Y, Hirano, R, Kurumizaka, H. | | Deposit date: | 2019-11-24 | | Release date: | 2020-11-25 | | Last modified: | 2023-10-11 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.
Commun Biol, 4, 2021
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5GSE
 | | Crystal structure of unusual nucleosome | | Descriptor: | DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | Authors: | Kato, D, Osakabe, A, Arimura, Y, Park, S.Y, Kurumizaka, H. | | Deposit date: | 2016-08-16 | | Release date: | 2017-05-03 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.14 Å) | | Cite: | Crystal structure of the overlapping dinucleosome composed of hexasome and octasome
Science, 356, 2017
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