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1JIE
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Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin
分子名称: BLEOMYCIN A2, bleomycin-binding protein
著者Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
登録日2001-07-02
公開日2002-02-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1JIF
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Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin
分子名称: BLEOMYCIN A2, CHLORIDE ION, COPPER (II) ION, ...
著者Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
登録日2001-07-02
公開日2002-02-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1NIQ
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BU of 1niq by Molmil
Solution Structure of the HOO-Bm bound BLMT, Transposon Tn5-encoding Bleomycin-binding Protein
分子名称: BLEOMYCIN A2, Bleomycin Resistance Protein, COPPER (II) ION
著者Sugiyama, M.
登録日2002-12-25
公開日2003-12-25
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution Structure of the HOO-Bm bound BLMT, Transposon Tn5-encoding Bleomycin-binding Protein
To be published
1IT5
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BU of 1it5 by Molmil
Solution structure of apo-type PLA2 from Streptomyces violaceruber A-2688.
分子名称: Phospholipase A2
著者Sugiyama, M, Ohtani, K, Izuhara, M, Koike, T.
登録日2002-01-09
公開日2002-09-04
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel prokaryotic phospholipase A2. Characterization, gene cloning, and solution structure.
J.Biol.Chem., 277, 2002
1IT4
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Solution structure of the prokaryotic Phospholipase A2 from Streptomyces violaceoruber
分子名称: CALCIUM ION, phospholipase A2
著者Ohtani, K, Sugiyama, M, Izuhara, M, Koike, T.
登録日2002-01-08
公開日2002-09-04
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel prokaryotic phospholipase A2. Characterization, gene cloning, and solution structure.
J.BIOL.CHEM., 277, 2002
1LWB
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BU of 1lwb by Molmil
Crystal structure of prokaryotic phospholipase A2 at atomic resolution
分子名称: putative secreted protein
著者Matoba, Y, Sugiyama, M.
登録日2002-05-31
公開日2003-06-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Atomic resolution structure of prokaryotic phospholipase A2: Analysis of internal motion and implication for a catalytic mechanism.
PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
1VFH
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BU of 1vfh by Molmil
Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae
分子名称: PYRIDOXAL-5'-PHOSPHATE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-13
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFS
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Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
分子名称: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-19
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1QTO
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1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS
分子名称: BLEOMYCIN-BINDING PROTEIN
著者Kawano, Y, Kumagai, T, Muta, K, Matoba, Y, Davies, J, Sugiyama, M.
登録日1999-06-28
公開日2000-06-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The 1.5 A crystal structure of a bleomycin resistance determinant from bleomycin-producing Streptomyces verticillus.
J.Mol.Biol., 295, 2000
1EWJ
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CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN COMPLEXED WITH BLEOMYCIN
分子名称: BLEOMYCIN A2, BLEOMYCIN RESISTANCE DETERMINANT
著者Maruyama, M, Kumagai, T, Matoba, Y, Hata, Y, Sugiyama, M.
登録日2000-04-26
公開日2001-04-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
1ECS
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THE 1.7 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT ENCODED ON THE TRANSPOSON TN5
分子名称: BLEOMYCIN RESISTANCE PROTEIN, CALCIUM ION, TETRAETHYLENE GLYCOL
著者Maruyama, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2000-01-25
公開日2001-05-02
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
1VFT
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BU of 1vft by Molmil
Crystal structure of L-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
分子名称: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-19
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1KP4
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CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2
分子名称: CALCIUM ION, phospholipase A2
著者Matoba, Y, Katsube, Y, Sugiyama, M.
登録日2001-12-28
公開日2002-09-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of prokaryotic phospholipase A2.
J.Biol.Chem., 277, 2002
6JIL
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BU of 6jil by Molmil
Crystal structure of D-cycloserine synthetase DcsG
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cycloserine biosynthesis protein DcsG, L(+)-TARTARIC ACID, ...
著者Matoba, Y, Sugiyama, M.
登録日2019-02-22
公開日2019-12-18
最終更新日2020-07-22
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis.
Febs J., 287, 2020
1MH6
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BU of 1mh6 by Molmil
Solution Structure of the Transposon Tn5-encoding Bleomycin-binding Protein, BLMT
分子名称: BLEOMYCIN RESISTANCE PROTEIN
著者Kumagai, T, Ohtani, K, Tsuboi, Y, Koike, T, Sugiyama, M.
登録日2002-08-19
公開日2003-02-19
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of the transposon Tn5-encoding bleomycin-binding protein complexed with an activated bleomycin analogue.
To be published
5Z0G
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BU of 5z0g by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 20 min at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Y9N
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Crystal structure of Pyrococcus furiosus PbaA (monoclinic form), an archaeal homolog of proteasome-assembly chaperone
分子名称: CHLORIDE ION, PbaA
著者Yagi-Utsumi, M, Sikdar, A, Kozai, T, Inoue, R, Sugiyama, M, Uchihashi, T, Satoh, T, Kato, K.
登録日2017-08-26
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation
Protein Eng. Des. Sel., 31, 2018
1WXC
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BU of 1wxc by Molmil
Crystal Structure of the copper-free Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein
分子名称: MelC, NITRATE ION, tyrosinase
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-01-20
公開日2006-01-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX5
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Crystal Structure of the copper-free Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein in the monoclinic crystal
分子名称: CHLORIDE ION, MelC, SODIUM ION, ...
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-01-19
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX2
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Crystal Structure of the oxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of hydrogenperoxide
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-01-19
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX4
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Crystal structure of the oxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of dithiothreitol
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-01-19
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1FAZ
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THE CRYSTAL STRUCTURE OF PROKARYOTIC PHOSPHOLIPASE A2
分子名称: PHOSPHOLIPASE A2
著者Matoba, Y, katsube, Y, Sugiyama, M.
登録日2000-07-14
公開日2001-07-18
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The crystal structure of prokaryotic phospholipase A2.
J.Biol.Chem., 277, 2002
5B1H
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BU of 5b1h by Molmil
Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum
分子名称: Cystathionine beta-synthase, GLYCEROL, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2015-12-04
公開日2016-12-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
5B1I
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Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine
分子名称: Cystathionine beta-synthase, N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2015-12-04
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
5Z0E
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Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the Y98F mutant of the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published

 

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