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4YZP
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BU of 4yzp by Molmil
Crystal structure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis
Descriptor: Cellulose hydrolase
Authors:Liberato, M.V, Popov, A, Polikarpov, I.
Deposit date:2015-03-25
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism.
Sci Rep, 6, 2016
7PSX
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BU of 7psx by Molmil
Structure of HOXB13 bound to hydroxymethylated DNA
Descriptor: DNA (5'-D(P*GP*GP*AP*CP*CP*TP*5HCP*AP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13, ...
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2021-09-24
Release date:2022-10-05
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of HOXB13 bound to hydroxymethylated DNA
To Be Published
7Q3O
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BU of 7q3o by Molmil
Structure of CDX1 bound to hydroxymethylated DNA
Descriptor: Homeobox protein CDX-1, hydroxymethylated DNA (18-MER)
Authors:Morgunova, E, Yin, Y, Popov, A, Taipale, J.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Structure of CDX1 bound to hydroxymethylated DNA
To Be Published
7Q4N
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BU of 7q4n by Molmil
transcription factor CDX2 bound to hydroxymethylated DNA
Descriptor: DNA (18-MER), Homeobox protein CDX-2
Authors:Morgunova, E, Yin, Y, Popov, A, Taipale, J.
Deposit date:2021-11-01
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:transcription factor CDX2 bound to hydroxymethylated DNA
To Be Published
1USY
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BU of 1usy by Molmil
ATP phosphoribosyl transferase (HisG:HisZ) complex from Thermotoga maritima
Descriptor: ATP PHOSPHORIBOSYLTRANSFERASE, ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT, HISTIDINE, ...
Authors:Vega, M.C, Fernandez, F.J, Murphy, G.E, Zou, P, Popov, A, Wilmanns, M.
Deposit date:2003-12-01
Release date:2004-12-15
Last modified:2014-09-10
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Regulation of the Hetero-Octameric ATP Phosphoribosyl Transferase Complex from Thermotoga Maritima by a tRNA Synthetase-Like Subunit.
Mol.Microbiol., 55, 2005
6SQG
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BU of 6sqg by Molmil
Crystal structure of viral rhodopsin OLPVRII
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ...
Authors:Gushchin, I, Kovalev, K, Bratanov, D, Polovinkin, V, Astashkin, R, Popov, A, Bourenkov, G, Gordeliy, V.
Deposit date:2019-09-03
Release date:2019-11-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unique structure and function of viral rhodopsins.
Nat Commun, 10, 2019
6EIG
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BU of 6eig by Molmil
Crystal structure of N24Q/C128T mutant of Channelrhodopsin 2
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Archaeal-type opsin 2, EICOSANE, ...
Authors:Kovalev, K, Borshchevskiy, V, Volkov, O, Polovinkin, V, Marin, E, Balandin, T, Astashkin, R, Bamann, C, Bueldt, G, Willlbold, D, Popov, A, Bamberg, E, Gordeliy, V.
Deposit date:2017-09-19
Release date:2017-12-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into ion conduction by channelrhodopsin 2.
Science, 358, 2017
6EID
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BU of 6eid by Molmil
Crystal structure of wild-type Channelrhodopsin 2
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Archaeal-type opsin 2, PHOSPHATE ION, ...
Authors:Borshchevskiy, V, Kovalev, K, Volkov, O, Polovinkin, V, Marin, E, Balandin, T, Astashkin, R, Bamann, C, Bueldt, G, Willlbold, D, Popov, A, Bamberg, E, Gordeliy, V.
Deposit date:2017-09-19
Release date:2017-12-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural insights into ion conduction by channelrhodopsin 2.
Science, 358, 2017
3S5H
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BU of 3s5h by Molmil
Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
Descriptor: COBALT (II) ION, Falcilysin
Authors:Morgunova, E, Ponpuak, M, Istvan, E, Popov, A, Goldberg, D, Eneqvist, T.
Deposit date:2011-05-23
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
To be Published
3S5M
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BU of 3s5m by Molmil
Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
Descriptor: Falcilysin, MAGNESIUM ION, ZINC ION
Authors:Morgunova, E, Ponpuak, M, Istvan, E, Popov, A, Goldberg, D, Eneqvist, T.
Deposit date:2011-05-23
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
To be Published
3S5I
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BU of 3s5i by Molmil
Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
Descriptor: Falcilysin
Authors:Morgunova, E, Ponpuak, M, Istvan, E, Popov, A, Goldberg, D, Eneqvist, T.
Deposit date:2011-05-23
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.743 Å)
Cite:Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
To be Published
3S5K
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BU of 3s5k by Molmil
Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
Descriptor: Falcilysin, ZINC ION
Authors:Morgunova, E, Ponpuak, M, Istvan, E, Popov, A, Goldberg, D, Eneqvist, T.
Deposit date:2011-05-23
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of falcilysin, a M16 metalloprotease from the malaria parasite Plasmodium falciparum
To be Published
4HEB
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BU of 4heb by Molmil
The Crystal structure of Maf protein of Bacillus subtilis
Descriptor: Septum formation protein Maf, UNKNOWN ATOM OR ION
Authors:Dong, A, Dombrovski, L, Brown, G, Flick, R, Tchigvintsev, D, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Iakounine, A, Min, J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2012-10-03
Release date:2012-10-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides.
Chem.Biol., 20, 2013
4IC1
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BU of 4ic1 by Molmil
Crystal structure of SSO0001
Descriptor: IRON/SULFUR CLUSTER, MANGANESE (II) ION, Uncharacterized protein
Authors:Nocek, B, Skarina, T, Lemak, S, Beloglazova, N, Flick, R, Brown, G, Savchenko, A, Joachimiak, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-12-09
Release date:2013-01-16
Last modified:2014-07-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus.
J.Am.Chem.Soc., 135, 2013
2P5X
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BU of 2p5x by Molmil
Crystal structure of Maf domain of human N-acetylserotonin O-methyltransferase-like protein
Descriptor: N-acetylserotonin O-methyltransferase-like protein, PHOSPHATE ION
Authors:Min, J, Wu, H, Dombrovski, L, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2007-03-16
Release date:2007-03-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides.
Chem.Biol., 20, 2013
1VPI
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BU of 1vpi by Molmil
PHOSPHOLIPASE A2 INHIBITOR FROM VIPOXIN
Descriptor: PHOSPHOLIPASE A2 INHIBITOR
Authors:Devedjiev, Y.D, Popov, A.N.
Deposit date:1996-12-17
Release date:1997-12-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:X-ray structure at 1.76 A resolution of a polypeptide phospholipase A2 inhibitor.
J.Mol.Biol., 266, 1997
6WGD
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BU of 6wgd by Molmil
Crystal structure of a 6-phospho-beta-glucosidase from Bacillus licheniformis
Descriptor: 1,2-ETHANEDIOL, 6-phospho-beta-glucosidase
Authors:Liberato, M.V, Popov, A, Polikarpov, I.
Deposit date:2020-04-05
Release date:2020-11-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray Structure, Bioinformatics Analysis, and Substrate Specificity of a 6-Phospho-beta-glucosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis .
J.Chem.Inf.Model., 60, 2020
7AKW
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BU of 7akw by Molmil
Crystal structure of the viral rhodopsins chimera O1O2
Descriptor: EICOSANE, RETINAL, chimera of viral rhodopsins OLPVR1 and OLPVRII
Authors:Kovalev, K, Zabelskii, D, Alekseev, A, Astashkin, R, Gordeliy, V.
Deposit date:2020-10-02
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Viral rhodopsins 1 are an unique family of light-gated cation channels.
Nat Commun, 11, 2020
7AKY
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BU of 7aky by Molmil
Crystal structure of the viral rhodopsin OLPVR1 in P21212 space group
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate, EICOSANE, viral rhodopsin OLPVR1
Authors:Kovalev, K, Zabelskii, D, Alekseev, A, Astashkin, R, Gordeliy, V.
Deposit date:2020-10-02
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Viral rhodopsins 1 are an unique family of light-gated cation channels.
Nat Commun, 11, 2020
7AKX
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BU of 7akx by Molmil
Crystal structure of the viral rhodopsin OLPVR1 in P1 space group
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, OLEIC ACID, ...
Authors:Kovalev, K, Zabelskii, D, Alekseev, A, Astashkin, R, Gordeliy, V.
Deposit date:2020-10-02
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Viral rhodopsins 1 are an unique family of light-gated cation channels.
Nat Commun, 11, 2020
7M1R
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BU of 7m1r by Molmil
Crystal structure of a 6-phospho-beta-galactosidase from Bacillus licheniformis
Descriptor: 1,2-ETHANEDIOL, 6-phospho-beta-galactosidase
Authors:Liberato, M.V, Popov, A, Polikarpov, I.
Deposit date:2021-03-14
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Differences in Gluco and Galacto Substrate-Binding Interactions in a Dual 6P beta-Glucosidase/6P beta-Galactosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis .
J.Chem.Inf.Model., 61, 2021
5TIL
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BU of 5til by Molmil
Murine class I major histocompatibility complex H-2 Db in complex with LCMV-derived GP33 altered peptide V3P and T-cell receptor P14
Descriptor: Alpha chain of murine P14 T cell receptor, Beta chain of murine T cell receptor P14, Beta-2-microglobulin, ...
Authors:Achour, A, Sandalova, T, Allerbring, E.B.
Deposit date:2016-10-03
Release date:2017-11-01
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Ternary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant
To be published
4XTL
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BU of 4xtl by Molmil
Crystal structure of the light-driven sodium pump KR2 in the monomeric blue form, pH 4.3
Descriptor: EICOSANE, GLYCEROL, SODIUM ION, ...
Authors:Gushchin, I, Shevchenko, V, Polovinkin, V, Gordeliy, V.
Deposit date:2015-01-23
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a light-driven sodium pump.
Nat.Struct.Mol.Biol., 22, 2015
4XTO
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BU of 4xto by Molmil
Crystal structure of the light-driven sodium pump KR2 in the pentameric red form, pH 5.6
Descriptor: EICOSANE, SODIUM ION, Sodium pumping rhodopsin
Authors:Gushchin, I, Shevchenko, V, Polovinkin, V, Gordeliy, V.
Deposit date:2015-01-23
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a light-driven sodium pump.
Nat.Struct.Mol.Biol., 22, 2015
4XTN
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BU of 4xtn by Molmil
Crystal structure of the light-driven sodium pump KR2 in the pentameric red form, pH 4.9
Descriptor: EICOSANE, SODIUM ION, Sodium pumping rhodopsin, ...
Authors:Gushchin, I, Shevchenko, V, Polovinkin, V, Gordeliy, V.
Deposit date:2015-01-23
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a light-driven sodium pump.
Nat.Struct.Mol.Biol., 22, 2015

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PDB entries from 2024-05-01

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