6LCQ
 
 | | Crystal structure of rice defensin OsAFP1 | | Descriptor: | Defensin-like protein CAL1, PHOSPHATE ION | | Authors: | Ochiai, A, Ogawa, K, Fukuda, M, Suzuki, M, Ito, K, Tanaka, T, Sagehashi, Y, Taniguchi, M. | | Deposit date: | 2019-11-19 | | Release date: | 2020-04-01 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.62 Å) | | Cite: | Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding.
J.Biosci.Bioeng., 130, 2020
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3WN6
 | | Crystal structure of alpha-amylase AmyI-1 from Oryza sativa | | Descriptor: | Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ... | | Authors: | Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T. | | Deposit date: | 2013-12-05 | | Release date: | 2014-09-10 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.16 Å) | | Cite: | Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
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2Z8R
 | | Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein | | Authors: | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-09-10 | | Release date: | 2007-10-16 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
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2Z8S
 | | Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | | Descriptor: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | | Authors: | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2007-09-10 | | Release date: | 2007-10-16 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
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3A0O
 | | Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 | | Descriptor: | CHLORIDE ION, Oligo alginate lyase | | Authors: | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-03-23 | | Release date: | 2010-03-31 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.11 Å) | | Cite: | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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2ZUX
 | | Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2008-10-28 | | Release date: | 2009-02-03 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.32 Å) | | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
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3AFL
 | | Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | | Authors: | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-09 | | Release date: | 2010-04-28 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.99 Å) | | Cite: | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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2ZUY
 | | Crystal structure of exotype rhamnogalacturonan lyase YesX | | Descriptor: | CALCIUM ION, YesX protein | | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2008-10-28 | | Release date: | 2009-02-03 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
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2ZYC
 | | Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | | Descriptor: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | | Authors: | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-01-19 | | Release date: | 2009-02-03 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.74 Å) | | Cite: | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ
Biochem.Biophys.Res.Commun., 381, 2009
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3AY2
 | | Crystal structure of Neisserial azurin | | Descriptor: | GLYCEROL, Lipid modified azurin protein, SULFATE ION, ... | | Authors: | Ochiai, A, Hashimoto, W, Yamada, T, Chakrabarty, A.M, Murata, K. | | Deposit date: | 2011-04-24 | | Release date: | 2012-05-02 | | Last modified: | 2024-10-09 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of Neisserial Azurin
To be Published
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3K3T
 | | E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1 | | Descriptor: | Peptidoglycan hydrolase FlgJ, SULFATE ION | | Authors: | Maruyama, Y, Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2009-10-04 | | Release date: | 2010-07-14 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
J.Basic Microbiol., 50, 2010
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2GH4
 | | YteR/D143N/dGalA-Rha | | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR | | Authors: | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2006-03-25 | | Release date: | 2006-08-29 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate
Biochem.Biophys.Res.Commun., 347, 2006
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2D8L
 | | Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc | | Descriptor: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, Putative glycosyl hydrolase yteR | | Authors: | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2005-12-06 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide
J.Mol.Biol., 360, 2006
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3AFM
 | | Crystal structure of aldose reductase A1-R responsible for alginate metabolism | | Descriptor: | Carbonyl reductase | | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-10 | | Release date: | 2010-08-11 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
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3AFO
 | | Crystal Structure of Yeast NADH Kinase complexed with NADH | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, NADH kinase POS5 | | Authors: | Ando, T, Ohashi, K, Ochiai, A, Miyagi, H, Kawai, S, Mikami, B, Murata, K. | | Deposit date: | 2010-03-10 | | Release date: | 2011-03-16 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structural factor conferring NADH kinase activity on yeast mitochondrial Pos5
To be Published
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3AT7
 | | Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | | Descriptor: | Alginate-binding flagellin | | Authors: | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-12-27 | | Release date: | 2011-02-23 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
Biochem.Biophys.Res.Commun., 405, 2011
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3AFN
 | | Crystal structure of aldose reductase A1-R complexed with NADP | | Descriptor: | Carbonyl reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TERTIARY-BUTYL ALCOHOL | | Authors: | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | Deposit date: | 2010-03-10 | | Release date: | 2010-08-11 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
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