Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6IOY
DownloadVisualize
BU of 6ioy by Molmil
Crystal structure of Porphyromonas gingivalis acetate kinase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Acetate kinase, SULFATE ION
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2018-10-31
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
6IOX
DownloadVisualize
BU of 6iox by Molmil
Crystal structure of Porphyromonas gingivalis phosphotransacetylase in complex with acetyl-CoA
Descriptor: ACETYL COENZYME *A, Phosphotransacetylase
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2018-10-31
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
6IOW
DownloadVisualize
BU of 6iow by Molmil
Crystal structure of Porphyromonas gingivalis phosphotransacetylase
Descriptor: Phosphotransacetylase
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2018-10-31
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
3SSI
DownloadVisualize
BU of 3ssi by Molmil
PROTEINASE INHIBITOR SSI (STREPTOMYCES SUBTILISIN, INHIBITOR) FROM STREPTOMYCES ALBOGRISEOLUS
Descriptor: STREPTOMYCES SUBTILISIN INHIBITOR
Authors:Suzuki, T, Nonaka, T, Mitsui, Y.
Deposit date:1996-03-01
Release date:1996-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Modulation of the Protein Proteinase Inhibitor Ssi (Streptomyces Subtilisin Inhibitor)
To be Published
3WOR
DownloadVisualize
BU of 3wor by Molmil
Crystal structure of the DAP BII octapeptide complex
Descriptor: Angiotensin II, GLYCEROL, ZINC ION, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOP
DownloadVisualize
BU of 3wop by Molmil
Crystal structure of the DAP BII hexapeptide complex II
Descriptor: Angiotensin IV, GLYCEROL, ZINC ION, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOQ
DownloadVisualize
BU of 3woq by Molmil
Crystal structure of the DAP BII hexapeptide complex III
Descriptor: Angiotensin IV, GLYCEROL, ZINC ION, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WON
DownloadVisualize
BU of 3won by Molmil
Crystal structure of the DAP BII dipeptide complex III
Descriptor: GLYCEROL, TYROSINE, VALINE, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOL
DownloadVisualize
BU of 3wol by Molmil
Crystal structure of the DAP BII dipeptide complex I
Descriptor: GLYCEROL, TYROSINE, VALINE, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOM
DownloadVisualize
BU of 3wom by Molmil
Crystal structure of the DAP BII dipeptide complex II
Descriptor: GLYCEROL, TYROSINE, VALINE, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOI
DownloadVisualize
BU of 3woi by Molmil
Crystal structure of the DAP BII (S657A)
Descriptor: GLYCEROL, ZINC ION, dipeptidyl aminopeptidase BII
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOO
DownloadVisualize
BU of 3woo by Molmil
Crystal structure of the DAP BII hexapeptide complex I
Descriptor: Angiotensin II, GLYCEROL, ZINC ION, ...
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOK
DownloadVisualize
BU of 3wok by Molmil
Crystal structure of the DAP BII (Space)
Descriptor: GLYCEROL, ZINC ION, dipeptidyl aminopeptidase BII
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOJ
DownloadVisualize
BU of 3woj by Molmil
Crystal structure of the DAP BII
Descriptor: GLYCEROL, ZINC ION, dipeptidyl aminopeptidase BII
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
1GE6
DownloadVisualize
BU of 1ge6 by Molmil
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
Authors:Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1GE5
DownloadVisualize
BU of 1ge5 by Molmil
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
Authors:Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1GE7
DownloadVisualize
BU of 1ge7 by Molmil
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
Authors:Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1G12
DownloadVisualize
BU of 1g12 by Molmil
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
Authors:Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
Deposit date:2000-10-10
Release date:2001-03-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1BOL
DownloadVisualize
BU of 1bol by Molmil
THE CRYSTAL STRUCTURE OF RIBONUCLEASE RH FROM RHIZOPUS NIVEUS AT 2.0 A RESOLUTION
Descriptor: PROTEIN (RIBONUCLEASE RH)
Authors:Kurihara, H, Nakamura, K.T.
Deposit date:1998-08-05
Release date:1998-08-12
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 A resolution.
J.Mol.Biol., 255, 1996
6FHZ
DownloadVisualize
BU of 6fhz by Molmil
Inward-facing conformation of a multidrug resistance MATE family transporter of the MOP superfamily.
Descriptor: Putative MOP flippase
Authors:Zakrzewska, S, Safarian, S, Michel, H.
Deposit date:2018-01-16
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Inward-facing conformation of a multidrug resistance MATE family transporter.
Proc.Natl.Acad.Sci.USA, 116, 2019
6GWH
DownloadVisualize
BU of 6gwh by Molmil
Outward-facing conformation of a multidrug resistance MATE family transporter of the MOP superfamily.
Descriptor: MOP transporter
Authors:Zakrzewska, S, Safarian, S, Michel, H.
Deposit date:2018-06-25
Release date:2019-06-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Inward-facing conformation of a multidrug resistance MATE family transporter.
Proc.Natl.Acad.Sci.USA, 116, 2019
1IXC
DownloadVisualize
BU of 1ixc by Molmil
Crystal structure of CbnR, a LysR family transcriptional regulator
Descriptor: LysR-type regulatory protein
Authors:Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T.
Deposit date:2002-06-18
Release date:2003-06-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend
J.Mol.Biol., 328, 2003
1IZ1
DownloadVisualize
BU of 1iz1 by Molmil
CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR
Descriptor: LysR-type regulatory protein
Authors:Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T.
Deposit date:2002-09-18
Release date:2003-05-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend
J.Mol.Biol., 328, 2003
3WRV
DownloadVisualize
BU of 3wrv by Molmil
Crystal structure of NN domain of resistance protein
Descriptor: Tm-1 protein
Authors:Matsumura, H, Katoh, E.
Deposit date:2014-02-27
Release date:2014-08-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1
Proc.Natl.Acad.Sci.USA, 111, 2014
3WRW
DownloadVisualize
BU of 3wrw by Molmil
Crystal structure of the N-terminal domain of resistance protein
Descriptor: L(+)-TARTARIC ACID, Tm-1 protein
Authors:Katoh, E, Kezuka, Y.
Deposit date:2014-02-27
Release date:2014-08-13
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1
Proc.Natl.Acad.Sci.USA, 111, 2014

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon