7EDB
| EcoT38I restriction endonuclease complexed with DNA | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ... | Authors: | Kita, K, Mikami, B. | Deposit date: | 2021-03-15 | Release date: | 2022-03-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Structural analysis of EcoT38I restriction endonuclease To Be Published
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4H2P
| Tetrameric form of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase (MHPCO) | Descriptor: | 1,2-ETHANEDIOL, 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, ... | Authors: | Kobayashi, J, Yoshida, H, Mikami, B, Hayashi, H, Kamitori, S, Yagi, T. | Deposit date: | 2012-09-13 | Release date: | 2013-09-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.981 Å) | Cite: | Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase To be Published
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4H2N
| Crystal structure of MHPCO, Y270F mutant | Descriptor: | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Kobayashi, J, Yoshida, H, Mikami, B, Hayashi, H, Kamitori, S, Yagi, T. | Deposit date: | 2012-09-12 | Release date: | 2013-09-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.302 Å) | Cite: | Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase To be Published
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4H2Q
| structure of MHPCO-5HN complex | Descriptor: | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, 5-hydroxypyridine-3-carboxylic acid, BETA-MERCAPTOETHANOL, ... | Authors: | Kobayashi, J, Yoshida, H, Mikami, B, Hayashi, H, Kamitori, S, Yagi, T. | Deposit date: | 2012-09-13 | Release date: | 2013-09-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.502 Å) | Cite: | Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase To be Published
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1NFT
| OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM | Descriptor: | FE (III) ION, NITRILOTRIACETIC ACID, PROTEIN (OVOTRANSFERRIN), ... | Authors: | Mizutani, K, Yamashita, H, Kurokawa, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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1OD5
| Crystal structure of glycinin A3B4 subunit homohexamer | Descriptor: | CARBONATE ION, GLYCININ, MAGNESIUM ION | Authors: | Adachi, M, Kanamori, J, Masuda, T, Yagasaki, K, Kitamura, K, Mikami, B, Utsumi, S. | Deposit date: | 2003-02-13 | Release date: | 2003-06-02 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer Proc.Natl.Acad.Sci.USA, 100, 2003
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1NNT
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1Q1Y
| Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin | Descriptor: | ACTINONIN, Peptide deformylase, ZINC ION | Authors: | Yoon, H.J, Lee, S.K, Kim, H.L, Kim, H.W, Kim, H.W, Lee, J.Y, Mikami, B, Suh, S.W. | Deposit date: | 2003-07-23 | Release date: | 2004-07-23 | Last modified: | 2017-02-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent Proteins, 57, 2004
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1Q6D
| Crystal structure of Soybean Beta-Amylase Mutant (M51T) with Increased pH Optimum | Descriptor: | SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | Authors: | Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B. | Deposit date: | 2003-08-13 | Release date: | 2004-02-24 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum J.Biol.Chem., 279, 2004
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1Q6C
| Crystal Structure of Soybean Beta-Amylase Complexed with Maltose | Descriptor: | SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, beta-amylase | Authors: | Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B. | Deposit date: | 2003-08-13 | Release date: | 2004-02-24 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum J.Biol.Chem., 279, 2004
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2GH4
| YteR/D143N/dGalA-Rha | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR | Authors: | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-03-25 | Release date: | 2006-08-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate Biochem.Biophys.Res.Commun., 347, 2006
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2FUZ
| UGL hexagonal crystal structure without glycine and DTT molecules | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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2FV0
| UGL_D88N/dGlcA-Glc-Rha-Glc | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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2FV1
| UGL_D88N/dGlcA-GlcNAc | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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1UIK
| Crystal structure of soybean beta-conglycinin alpha prime homotrimer | Descriptor: | MAGNESIUM ION, alpha prime subunit of beta-conglycinin | Authors: | Maruyama, Y, Maruyama, N, Mikami, B, Utsumi, S. | Deposit date: | 2003-07-16 | Release date: | 2004-07-16 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of the core region of the soybean beta-conglycinin alpha' subunit. Acta Crystallogr.,Sect.D, 60, 2004
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1V3H
| The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2003-11-02 | Release date: | 2004-06-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase. J.Mol.Biol., 339, 2004
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1UKP
| Crystal structure of soybean beta-amylase mutant substituted at surface region | Descriptor: | Beta-amylase, SULFATE ION | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | Deposit date: | 2003-08-31 | Release date: | 2004-02-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues Protein Eng., 16, 2003
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1UKO
| Crystal structure of soybean beta-amylase mutant substituted at surface region | Descriptor: | Beta-amylase, SULFATE ION | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | Deposit date: | 2003-08-30 | Release date: | 2004-02-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues Protein Eng., 16, 2003
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1V9Y
| Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form) | Descriptor: | Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T. | Deposit date: | 2004-02-04 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.32 Å) | Cite: | A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J.Biol.Chem., 279, 2004
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1V9Z
| Crystal Structure of the heme PAS sensor domain of Ec DOS (Ferrous Form) | Descriptor: | Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T. | Deposit date: | 2004-02-04 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J.Biol.Chem., 279, 2004
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1VAV
| Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution | Descriptor: | Alginate lyase PA1167 | Authors: | Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B. | Deposit date: | 2004-02-19 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold. J.Biol.Chem., 279, 2004
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1V73
| Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase of a Psychrophile Shewanella SP. | Descriptor: | ACETIC ACID, CALCIUM ION, psychrophilic phosphatase I | Authors: | Tsuruta, H, Mikami, B, Aizono, Y. | Deposit date: | 2003-12-09 | Release date: | 2005-03-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase from a Psychrophile, Shewanella sp J.Biochem.(Tokyo), 137, 2005
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1VB6
| Crystal Structure of the heme PAS sensor domain of Ec DOS (oxygen-bound form) | Descriptor: | Heme pas sensor protein, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Watanabe, M, Sagami, I, Mikami, B, Shimizu, T. | Deposit date: | 2004-02-24 | Release date: | 2005-04-19 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.56 Å) | Cite: | Structure of oxygen-bound form of a Heme PAS domain of Ec DOS To be Published
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1V3I
| The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2003-11-02 | Release date: | 2004-06-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase. J.Mol.Biol., 339, 2004
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1TFA
| OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM | Descriptor: | PROTEIN (OVOTRANSFERRIN), SULFATE ION | Authors: | Mizutani, K, Yamashita, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2018-04-04 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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