Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6LAU
DownloadVisualize
BU of 6lau by Molmil
the wildtype SAM-VI riboswitch bound to SAH
Descriptor: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ...
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.109 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAX
DownloadVisualize
BU of 6lax by Molmil
the mutant SAM-VI riboswitch (U6C) bound to SAM
Descriptor: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
Authors:Sun, A, Ren, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAZ
DownloadVisualize
BU of 6laz by Molmil
the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1
Descriptor: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate, MAGNESIUM ION, RNA (55-MER), ...
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAS
DownloadVisualize
BU of 6las by Molmil
the wildtype SAM-VI riboswitch bound to SAM
Descriptor: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (2.708 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
7D7X
DownloadVisualize
BU of 7d7x by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine diphosphate (ADP)
Descriptor: 18GAAA(52-MER), ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.631 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D7W
DownloadVisualize
BU of 7d7w by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+)
Descriptor: 18GAAA (52-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.391 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D82
DownloadVisualize
BU of 7d82 by Molmil
Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+
Descriptor: 832GAAA (50-MER), MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.489 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D81
DownloadVisualize
BU of 7d81 by Molmil
Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+)
Descriptor: 832GAAA (50-MER), MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D7Y
DownloadVisualize
BU of 7d7y by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine triphosphate (ATP)
Descriptor: 18GAAA (52-MER), ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D7V
DownloadVisualize
BU of 7d7v by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein
Descriptor: 17delU1A (58-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7D7Z
DownloadVisualize
BU of 7d7z by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+
Descriptor: 18GAAA(52-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chen, H, Ren, A.M.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
7ELS
DownloadVisualize
BU of 7els by Molmil
Crystal structure of xanthine riboswitch with 8-azaxanthine
Descriptor: 8-AZAXANTHINE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
7ELR
DownloadVisualize
BU of 7elr by Molmil
Crystal structure of xanthine riboswitch with xanthine
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, NMT1 (46-MER), ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
7ELP
DownloadVisualize
BU of 7elp by Molmil
Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, IRIDIUM ION, MAGNESIUM ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2021-07-21
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
7ELQ
DownloadVisualize
BU of 7elq by Molmil
Crystal structure of xanthine riboswitch with xanthine, manganese saok
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
5D99
DownloadVisualize
BU of 5d99 by Molmil
3DW4 redetermined by direct methods starting from random phase angles
Descriptor: GLYCEROL, RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA
Authors:Mooers, B.H.M.
Deposit date:2015-08-18
Release date:2016-04-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry.
Acta Crystallogr D Struct Biol, 72, 2016
3C44
DownloadVisualize
BU of 3c44 by Molmil
Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin
Descriptor: CHLORIDE ION, HIV-1 subtype F genomic RNA, PAROMOMYCIN, ...
Authors:Freisz, S, Ennifar, E, Dumas, P.
Deposit date:2008-01-29
Release date:2008-05-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site.
Angew.Chem.Int.Ed.Engl., 47, 2008
3DVV
DownloadVisualize
BU of 3dvv by Molmil
Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)
Descriptor: CHLORIDE ION, HIV-1 genomic RNA, POTASSIUM ION, ...
Authors:Ennifar, E, Dumas, P, Olieric, V.
Deposit date:2008-07-21
Release date:2008-08-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:A fast strategy for Selenium derivatization and phasing of RNA structures
To be Published
<1234

 

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon