Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3ZPY
DownloadVisualize
BU of 3zpy by Molmil
Crystal structure of the marine PL7 alginate lyase AlyA1 from Zobellia galactanivorans
Descriptor: ALGINATE LYASE, FAMILY PL7, SODIUM ION
Authors:Thomas, F, Jeudy, A, Michel, G, Czjzek, M.
Deposit date:2013-03-04
Release date:2013-06-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Comparative Characterization of Two Marine Alginate Lyases from Zobellia Galactanivorans Reveals Distinct Modes of Action and Exquisite Adaptation to Their Natural Substrate.
J.Biol.Chem., 288, 2013
4A15
DownloadVisualize
BU of 4a15 by Molmil
Crystal structure of an XPD DNA complex
Descriptor: 5'-D(*DTP*AP*CP*GP)-3', ATP-DEPENDENT DNA HELICASE TA0057, CALCIUM ION, ...
Authors:Kuper, J, Wolski, S.C, Michels, G, Kisker, C.
Deposit date:2011-09-14
Release date:2012-02-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Functional and Structural Studies of the Nucleotide Excision Repair Helicase Xpd Suggest a Polarity for DNA Translocation.
Embo J., 31, 2011
4BE3
DownloadVisualize
BU of 4be3 by Molmil
crystal structure of the exolytic PL7 alginate lyase AlyA5 from Zobellia galactanivorans
Descriptor: ALGINATE LYASE, FAMILY PL7, D(-)-TARTARIC ACID, ...
Authors:Thomas, F, Jeudy, A, Michel, G, Czjzek, M.
Deposit date:2013-03-05
Release date:2013-06-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Comparative Characterization of Two Marine Alginate Lyases from Zobellia Galactanivorans Reveals Distinct Modes of Action and Exquisite Adaptation to Their Natural Substrate.
J.Biol.Chem., 288, 2013
4BOW
DownloadVisualize
BU of 4bow by Molmil
Crystal structure of LamA_E269S from Z. galactanivorans in complex with laminaritriose and laminaritetraose
Descriptor: CALCIUM ION, ENDO-1,3-BETA-GLUCANASE, FAMILY GH16, ...
Authors:Labourel, A, Jeudy, A, Czjzek, M, Michel, G.
Deposit date:2013-05-22
Release date:2013-12-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The Beta-Glucanase Zglama from Zobellia Galactanivorans Evolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin
J.Biol.Chem., 289, 2014
4BPZ
DownloadVisualize
BU of 4bpz by Molmil
Crystal structure of lamA_E269S from Zobellia galactanivorans in complex with a trisaccharide of 1,3-1,4-beta-D-glucan.
Descriptor: CALCIUM ION, ENDO-1,3-BETA-GLUCANASE, FAMILY GH16, ...
Authors:Labourel, A, Jam, M, Jeudy, A, Czjzek, M, Michel, G.
Deposit date:2013-05-29
Release date:2013-12-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:The Beta-Glucanase Zglama from Zobellia Galactanivorans Evolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin.
J.Biol.Chem., 289, 2014
4BQ1
DownloadVisualize
BU of 4bq1 by Molmil
Crystal structure of of LamAcat from Zobellia galactanivorans
Descriptor: CALCIUM ION, ENDO-1,3-BETA-GLUCANASE, FAMILY GH16, ...
Authors:Labourel, A, Jam, M, Jeudy, A, Michel, G, Czjzek, M.
Deposit date:2013-05-29
Release date:2013-12-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Beta Glucanase Zglama from Zobellia Galactanivorans Evolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin
J.Biol.Chem., 289, 2014
4CTE
DownloadVisualize
BU of 4cte by Molmil
Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S in complex with a thio-oligosaccharide
Descriptor: 1,2-ETHANEDIOL, 1-thio-beta-D-glucopyranose-(1-3)-1-thio-beta-D-glucopyranose, ACETATE ION, ...
Authors:Labourel, A, Jam, M, Legentil, L, Sylla, B, Ficko-Blean, E, Hehemann, J.H, Ferrieres, V, Czjzek, M, Michel, G.
Deposit date:2014-03-13
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Biochemical Characterization of the Laminarina Zglamc[Gh16] from Zobellia Galactanivorans Suggests Preferred Recognition of Branched Laminarin
Acta Crystallogr.,Sect.D, 71, 2015
4CIT
DownloadVisualize
BU of 4cit by Molmil
Crystal structure of the first bacterial vanadium dependant iodoperoxidase
Descriptor: SODIUM ION, VANADATE ION, VANADIUM-DEPENDENT HALOPEROXIDASE
Authors:Rebuffet, E, Delage, L, Fournier, J.B, Rzonca, J, Potin, P, Michel, G, Czjzek, M, Leblanc, C.
Deposit date:2013-12-16
Release date:2014-10-08
Last modified:2020-06-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Bacterial Vanadium Iodoperoxidase from the Marine Flavobacteriaceae Zobellia Galactanivorans Reveals Novel Molecular and Evolutionary Features of Halide Specificity in This Enzyme Family.
Appl.Environ.Microbiol., 80, 2014
4CRQ
DownloadVisualize
BU of 4crq by Molmil
Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Labourel, A, Jam, M, Legentil, L, Sylla, B, Ficko-Blean, E, Hehemann, J.H, Ferrieres, V, Czjzek, M, Michel, G.
Deposit date:2014-02-28
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Biochemical Characterization of the Laminarina Zglamc[Gh16] from Zobellia Galactanivorans Suggests Preferred Recognition of Branched Laminarin
Acta Crystallogr.,Sect.D, 71, 2015
5OCQ
DownloadVisualize
BU of 5ocq by Molmil
Crystal structure of the complex of the kappa-carrageenase from Pseudoalteromonas carrageenovora with an oligotetrasaccharide of kappa-carrageenan
Descriptor: 3,6-anhydro-D-galactose, 4-O-sulfo-beta-D-galactopyranose, CITRIC ACID, ...
Authors:Czjzek, M, Leroux, C, Bernard, T, Matard-Mann, M, Jeudy, A, Michel, G.
Deposit date:2017-07-03
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into marine carbohydrate degradation by family GH16 kappa-carrageenases.
J. Biol. Chem., 292, 2017
5OCR
DownloadVisualize
BU of 5ocr by Molmil
Crystal structure of the kappa-carrageenase zobellia_236 from Zobellia galactanivorans
Descriptor: GLYCEROL, Kappa-carrageenase, MAGNESIUM ION
Authors:Czjzek, M, Matard-Mann, M, Michel, G, Jeudy, A, Larocque, R.
Deposit date:2017-07-03
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural insights into marine carbohydrate degradation by family GH16 kappa-carrageenases.
J. Biol. Chem., 292, 2017
6GL0
DownloadVisualize
BU of 6gl0 by Molmil
Structure of ZgEngAGH5_4 in complex with a cellotriose
Descriptor: Endoglucanase, family GH5, MAGNESIUM ION, ...
Authors:Dorival, J, Ruppert, S, Gunnoo, M, Orlowski, A, Chapelais, M, Dabin, J, Labourel, A, Thompson, D, Michel, G, Czjzek, M, Genicot, S.
Deposit date:2018-05-22
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The laterally acquired GH5ZgEngAGH5_4from the marine bacteriumZobellia galactanivoransis dedicated to hemicellulose hydrolysis.
Biochem. J., 475, 2018
6GL2
DownloadVisualize
BU of 6gl2 by Molmil
Structure of ZgEngAGH5_4 wild type at 1.2 Angstrom resolution
Descriptor: Endoglucanase, family GH5, IMIDAZOLE
Authors:Dorival, J, Ruppert, S, Gunnoo, M, Orlowski, A, Chapelais, M, Dabin, J, Labourel, A, Thompson, D, Michel, G, Czjzek, M, Genicot, S.
Deposit date:2018-05-22
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The laterally acquired GH5ZgEngAGH5_4from the marine bacteriumZobellia galactanivoransis dedicated to hemicellulose hydrolysis.
Biochem. J., 475, 2018
6HHN
DownloadVisualize
BU of 6hhn by Molmil
Crystal structure of L-rhamnose mutarotase FA22100 from Formosa agariphila
Descriptor: L-rhamnose mutarotase
Authors:Roret, T, Prechoux, A, Michel, G, Czjzek, M.
Deposit date:2018-08-28
Release date:2019-06-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.
Nat.Chem.Biol., 15, 2019
1NYT
DownloadVisualize
BU of 1nyt by Molmil
SHIKIMATE DEHYDROGENASE AroE COMPLEXED WITH NADP+
Descriptor: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION, ...
Authors:Roszak, A.W, Lapthorn, A.J.
Deposit date:2003-02-13
Release date:2003-03-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities.
J.Biol.Chem., 278, 2003
7OQD
DownloadVisualize
BU of 7oqd by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1636-S1_20)
Descriptor: 3-O-sulfo-beta-D-galactopyranose, Arylsulfatase, CALCIUM ION
Authors:Sofia de Jesus Vaz Luis, A, Basle, A, Martens, E.C, Cartmell, A.
Deposit date:2021-06-03
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
4U6D
DownloadVisualize
BU of 4u6d by Molmil
Zg3615, a family 117 glycoside hydrolase in complex with beta-3,6-anhydro-L-galactose
Descriptor: 1,2-ETHANEDIOL, 3,6-anhydro-beta-L-galactopyranose, CALCIUM ION, ...
Authors:Ficko-Blean, E.
Deposit date:2014-07-28
Release date:2015-02-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and structural investigation of two paralogous glycoside hydrolases from Zobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family.
Acta Crystallogr.,Sect.D, 71, 2015
4U6B
DownloadVisualize
BU of 4u6b by Molmil
Zg3597, a family 117 glycoside hydrolase, produced by the marine bacterium Zobellia galactanivorans
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CALCIUM ION, ...
Authors:Ficko-Blean, E.
Deposit date:2014-07-28
Release date:2015-02-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Biochemical and structural investigation of two paralogous glycoside hydrolases from Zobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family.
Acta Crystallogr.,Sect.D, 71, 2015
7ALL
DownloadVisualize
BU of 7all by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT4683-S1_4)
Descriptor: Arylsulfatase, CALCIUM ION, IODIDE ION, ...
Authors:Sofia de Jesus Vaz Luis, A, Martens, E.C, Basle, A, Cartmell, A.
Deposit date:2020-10-06
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
7ANB
DownloadVisualize
BU of 7anb by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1622-S1_20)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, N-acetylgalactosamine-6-sulfatase, ...
Authors:Sofia de Jesus Vaz Luis, A, Basle, A, Martens, E.C, Cartmell, A.
Deposit date:2020-10-11
Release date:2021-10-27
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
7AN1
DownloadVisualize
BU of 7an1 by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1636-S1_20)
Descriptor: Arylsulfatase, CALCIUM ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Sofia de Jesus Vaz Luis, A, Basle, A, Martens, E.C, Cartmell, A.
Deposit date:2020-10-10
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
7ANA
DownloadVisualize
BU of 7ana by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1622-S1_20)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, ...
Authors:Sofia de Jesus Vaz Luis, A, Basle, A, Martens, E.C, Cartmell, A.
Deposit date:2020-10-11
Release date:2021-11-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
7BLY
DownloadVisualize
BU of 7bly by Molmil
Structure of the chitin deacetylase AngCDA from Aspergillus niger
Descriptor: Aspergillus niger contig An12c0130, genomic contig, CHLORIDE ION, ...
Authors:Roret, T, Bonin, M, Hembach, L, Moerschbacher, B.M.
Deposit date:2021-01-19
Release date:2021-09-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:In silico and in vitro analysis of an Aspergillus niger chitin deacetylase to decipher its subsite sugar preferences.
J.Biol.Chem., 297, 2021
6HPD
DownloadVisualize
BU of 6hpd by Molmil
The structure of a beta-glucuronidase from glycoside hydrolase family 2
Descriptor: BROMIDE ION, Beta-galactosidase (GH2), MAGNESIUM ION
Authors:Robb, C.S, Gerlach, N, Reisky, L, Bornshoeru, U, Hehemann, J.H.
Deposit date:2018-09-20
Release date:2019-07-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.
Nat.Chem.Biol., 15, 2019
<12

 

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon