Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5AYH
DownloadVisualize
BU of 5ayh by Molmil
Structure of the entire dynein stalk region
Descriptor: Cytoplasmic dynein 1 heavy chain 1
Authors:Kurisu, G, Nishikawa, Y, Inatomi, M.
Deposit date:2015-08-21
Release date:2015-12-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.011 Å)
Cite:Structural Change in the Dynein Stalk Region Associated with Two Different Affinities for the Microtubule
J.Mol.Biol., 428, 2016
5AUK
DownloadVisualize
BU of 5auk by Molmil
Crystal structure of the Ga-substituted Ferredoxin
Descriptor: BENZAMIDINE, Ferredoxin-1, SULFATE ION, ...
Authors:Kurisu, G, Muraki, N, Taya, M, Hase, T.
Deposit date:2015-04-24
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin
Biochemistry, 54, 2015
6LU1
DownloadVisualize
BU of 6lu1 by Molmil
Cyanobacterial PSI Monomer from T. elongatus by Single Particle CRYO-EM at 3.2 A Resolution
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Kurisu, G, Coruh, O, Tanaka, H, Gerle, C, Kawamoto, A, Kato, T, Namba, K, Nowaczyk, M.M, Rogner, M, Misumi, Y, Frank, A, Eithar, E.M.
Deposit date:2020-01-24
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
Commun Biol, 4, 2021
8I3J
DownloadVisualize
BU of 8i3j by Molmil
Crystal structure of human inner-arm dynein heavy chain d stalk and microtubule binding domain
Descriptor: Dynein axonemal heavy chain 1
Authors:Ko, S, Yu, J, Toda, A, Tanaka, H, Kurisu, G.
Deposit date:2023-01-17
Release date:2023-08-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Crystal structure of the stalk region of axonemal inner-arm dynein-d reveals unique features in the coiled-coil and microtubule-binding domain.
Febs Lett., 597, 2023
7FIX
DownloadVisualize
BU of 7fix by Molmil
Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, CALCIUM ION, ...
Authors:Li, J, Kurisu, G.
Deposit date:2021-08-01
Release date:2022-09-21
Last modified:2022-09-28
Method:ELECTRON MICROSCOPY (1.97 Å)
Cite:Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97 angstrom resolution.
Commun Biol, 5, 2022
3J6P
DownloadVisualize
BU of 3j6p by Molmil
Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Descriptor: Dynein heavy chain, cytoplasmic, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Uchimura, S, Fujii, T, Takazaki, H, Ayukawa, R, Nishikawa, Y, Minoura, I, Hachikubo, Y, Kurisu, G, Sutoh, K, Kon, T, Namba, K, Muto, E.
Deposit date:2014-03-20
Release date:2014-12-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation
J.Cell Biol., 208, 2015
6TJV
DownloadVisualize
BU of 6tjv by Molmil
Structure of the NDH-1MS complex from Thermosynechococcus elongatus
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, BETA-CAROTENE, ...
Authors:Schuller, J.M, Saura, P, Thiemann, J, Schuller, S.K, Gamiz-Hernandez, A.P, Kurisu, G, Nowaczyk, M.M, Kaila, V.R.I.
Deposit date:2019-11-27
Release date:2020-02-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I.
Nat Commun, 11, 2020
8HJZ
DownloadVisualize
BU of 8hjz by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58Q mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
8HJY
DownloadVisualize
BU of 8hjy by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58E/F104W mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
8HJX
DownloadVisualize
BU of 8hjx by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58E mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
2ZYZ
DownloadVisualize
BU of 2zyz by Molmil
Pyrobaculum aerophilum splicing endonuclease
Descriptor: Putative uncharacterized protein PAE0789, tRNA-splicing endonuclease
Authors:Yoshinari, S, Inaoka, D.K, Watanabe, Y, Shiba, T, Kurisu, G, Harada, S.
Deposit date:2009-01-30
Release date:2009-06-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease
Nucleic Acids Res., 37, 2009
3A28
DownloadVisualize
BU of 3a28 by Molmil
Crystal structure of L-2,3-butanediol dehydrogenase
Descriptor: BETA-MERCAPTOETHANOL, L-2.3-butanediol dehydrogenase, MAGNESIUM ION, ...
Authors:Otagiri, M, Kurisu, G, Ui, S, Kusunoki, M.
Deposit date:2009-05-02
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for chiral substrate recognition by two 2,3-butanediol dehydrogenases
Febs Lett., 584, 2010
4XDD
DownloadVisualize
BU of 4xdd by Molmil
Apo [FeFe]-Hydrogenase CpI
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ...
Authors:Esselborn, J, Hofmann, E, Kurisu, G, Happe, T.
Deposit date:2014-12-19
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.
Chem Sci, 7, 2016
4XDC
DownloadVisualize
BU of 4xdc by Molmil
Active semisynthetic [FeFe]-hydrogenase CpI with aza-dithiolato-bridged [2Fe] cofactor
Descriptor: FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, Iron hydrogenase 1, ...
Authors:Esselborn, J, Hofmann, E, Kurisu, G, Happe, T.
Deposit date:2014-12-19
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.
Chem Sci, 7, 2016
5ZF0
DownloadVisualize
BU of 5zf0 by Molmil
X-ray Structure of the Electron Transfer Complex between Ferredoxin and Photosystem I
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Kubota-Kawai, H, Mutoh, R, Shinmura, K, Setif, P, Nowaczyk, M, Roegner, M, Ikegami, T, Tanaka, T, Kurisu, G.
Deposit date:2018-03-01
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex
Nat Plants, 4, 2018
8H2U
DownloadVisualize
BU of 8h2u by Molmil
X-ray Structure of photosystem I-LHCI super complex from Chlamydomonas reinhardtii.
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Tanaka, H, Kubota-Kawai, H, Misumi, Y, Kurisu, G.
Deposit date:2022-10-07
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin.
Biochim Biophys Acta Bioenerg, 1864, 2023
8HN3
DownloadVisualize
BU of 8hn3 by Molmil
Soluble domain of cytochrome c-556 from Chlorobaculum tepidum
Descriptor: ACETATE ION, Cytochrome c-556, GLYCEROL, ...
Authors:Kishimoto, H, Azai, C, Yamamoto, T, Mutoh, R, Nakaniwa, T, Tanaka, H, Kurisu, G, Oh-oka, H.
Deposit date:2022-12-07
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.
Curr Res Struct Biol, 5, 2023
8HN2
DownloadVisualize
BU of 8hn2 by Molmil
Selenomethionine-labelled soluble domain of Rieske iron-sulfur protein from chlorobaculum tepidum
Descriptor: Cytochrome b6-f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER
Authors:Kishimoto, H, Mutoh, R, Tanaka, H, Kurisu, G, Oh-oka, H.
Deposit date:2022-12-07
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.
Curr Res Struct Biol, 5, 2023
1GEE
DownloadVisualize
BU of 1gee by Molmil
Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+
Descriptor: GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S.
Deposit date:2000-11-07
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1G6K
DownloadVisualize
BU of 1g6k by Molmil
Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+
Descriptor: GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S.
Deposit date:2000-11-06
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1WMZ
DownloadVisualize
BU of 1wmz by Molmil
Crystal Structure of C-type Lectin CEL-I complexed with N-acetyl-D-galactosamine
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, ...
Authors:Sugawara, H, Kusunoki, M, Kurisu, G, Fujimoto, T, Aoyagi, H, Hatakeyama, T.
Deposit date:2004-07-22
Release date:2004-09-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characteristic Recognition of N-Acetylgalactosamine by an Invertebrate C-type Lectin, CEL-I, Revealed by X-ray Crystallographic Analysis
J.Biol.Chem., 279, 2004
1WMY
DownloadVisualize
BU of 1wmy by Molmil
Crystal Structure of C-type Lectin CEL-I from Cucumaria echinata
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, lectin CEL-I, ...
Authors:Sugawara, H, Kusunoki, M, Kurisu, G, Fujimoto, T, Aoyagi, H, Hatakeyama, T.
Deposit date:2004-07-22
Release date:2004-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characteristic Recognition of N-Acetylgalactosamine by an Invertebrate C-type Lectin, CEL-I, Revealed by X-ray Crystallographic Analysis
J.Biol.Chem., 279, 2004
5WSF
DownloadVisualize
BU of 5wsf by Molmil
Crystal structure of a cupin protein (tm1459) in osmium (Os)-substituted form II
Descriptor: OSMIUM ION, Uncharacterized protein tm1459
Authors:Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2016-12-06
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
5WSD
DownloadVisualize
BU of 5wsd by Molmil
Crystal structure of a cupin protein (tm1459) in apo form
Descriptor: Uncharacterized protein tm1459
Authors:Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2016-12-06
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
5WSE
DownloadVisualize
BU of 5wse by Molmil
Crystal structure of a cupin protein (tm1459) in osmium (Os) substituted form I
Descriptor: OSMIUM ION, Uncharacterized protein tm1459
Authors:Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2016-12-06
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon