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3AI2
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BU of 3ai2 by Molmil
The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI3
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BU of 3ai3 by Molmil
The crystal structure of L-Sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose
分子名称: L-sorbose, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase, ...
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI1
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BU of 3ai1 by Molmil
The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity
分子名称: NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-06
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3B2E
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BU of 3b2e by Molmil
Crystal structure of S. cerevisiae Get3 in the open conformation in complex with Get1 cytosolic domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-07-30
公開日2012-06-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
3VLC
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BU of 3vlc by Molmil
Crystal structure of S. cerevisiae Get3 in the semi open conformation in complex with Get1 cytosolic domain at 4.5 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-11-30
公開日2012-06-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
3ORY
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BU of 3ory by Molmil
Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus
分子名称: PHOSPHATE ION, flap endonuclease 1
著者Mase, T, Kubota, K, Miyazono, K, Kawarabayashii, Y, Tanokura, M.
登録日2010-09-08
公開日2011-02-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus
Acta Crystallogr.,Sect.F, 67, 2011
3JRS
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BU of 3jrs by Molmil
Crystal structure of (+)-ABA-bound PYL1
分子名称: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790
著者Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
登録日2009-09-08
公開日2009-11-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRQ
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BU of 3jrq by Molmil
Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
分子名称: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790
著者Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
登録日2009-09-08
公開日2009-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of abscisic acid signalling
Nature, 462, 2009
7WAB
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BU of 7wab by Molmil
Crystal structure of the prolyl endoprotease, PEP, from Aspergillus niger
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COMPASS (Complex proteins associated with Set1p) component shg1 family protein, ...
著者Miyazono, K, Kubota, K, Takahashi, K, Tanokura, M.
登録日2021-12-14
公開日2022-01-12
最終更新日2022-02-16
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure and substrate recognition mechanism of the prolyl endoprotease PEP from Aspergillus niger.
Biochem.Biophys.Res.Commun., 591, 2022
1Y43
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BU of 1y43 by Molmil
crystal structure of aspergilloglutamic peptidase from Aspergillus niger
分子名称: Aspergillopepsin II heavy chain, Aspergillopepsin II light chain, SULFATE ION
著者Sasaki, H, Nakagawa, A, Iwata, S, Muramatsu, T, Suganuma, M, Sawano, Y, Kojima, M, Kubota, K, Takahashi, K.
登録日2004-11-30
公開日2005-12-13
最終更新日2013-02-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Proc.Jpn.Acad.,Ser.B, 80, 2004
3A76
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BU of 3a76 by Molmil
The crystal structure of LinA
分子名称: GLYCEROL, Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE
著者Okai, M, Kubota, K, Fukuda, M, Nagata, Y, Nagata, K, Tanokura, M.
登録日2009-09-15
公開日2010-09-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
3TRS
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BU of 3trs by Molmil
The crystal structure of aspergilloglutamic peptidase from Aspergillus niger
分子名称: Aspergillopepsin-2 heavy chain, Aspergillopepsin-2 light chain, DIMETHYL SULFOXIDE
著者Sasaki, H, Kubota, K, Lee, W.C, Ohtsuka, J, Kojima, M, Takahashi, K, Tanokura, M.
登録日2011-09-10
公開日2012-08-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of an intermediate dimer of aspergilloglutamic peptidase that mimics the enzyme-activation product complex produced upon autoproteolysis.
J.Biochem., 152, 2012
1ZOV
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BU of 1zov by Molmil
Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase
著者Nagata, K, Sasaki, H, Ohtsuka, J, Hua, M, Okai, M, Kubota, K, Kamo, M, Ito, K, Ichikawa, T, Koyama, Y, Tanokura, M.
登録日2005-05-14
公開日2006-05-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
3LQB
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BU of 3lqb by Molmil
Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio
分子名称: 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ...
著者Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I.
登録日2010-02-08
公開日2010-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
2ZO4
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BU of 2zo4 by Molmil
Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8
分子名称: Metallo-beta-lactamase family protein, ZINC ION
著者Yamamura, A, Nagata, K, Agari, Y, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, Tanokura, M.
登録日2008-05-05
公開日2009-03-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.
Proteins, 73, 2008
2ZTS
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BU of 2zts by Molmil
Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein PH0186
著者Ming, H, Miyazono, K, Tanokura, M.
登録日2008-10-08
公開日2009-03-24
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Proteins, 75, 2009
5H11
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BU of 5h11 by Molmil
Crystal structure of Zebrafish Sec10
分子名称: BROMIDE ION, Uncharacterized protein
著者Chen, J, Yamagata, A, Fukai, S.
登録日2016-10-07
公開日2017-02-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.732 Å)
主引用文献Crystal structure of Sec10, a subunit of the exocyst complex
Sci Rep, 7, 2017
3WXG
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BU of 3wxg by Molmil
Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin
分子名称: Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
3WXE
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BU of 3wxe by Molmil
Crystal structure of CYLD USP domain (C596S) in complex with Met1-linked diubiquitin
分子名称: Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
3WXF
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BU of 3wxf by Molmil
Crystal structure of CYLD USP domain (C596S E674Q) in complex with Met1-linked diubiquitin
分子名称: SULFATE ION, Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
6KIP
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BU of 6kip by Molmil
Crystal structure of PTPRD phosphatase domain in complex with Liprin-alpha3 tandem SAM domains
分子名称: Liprin-alpha-3, Receptor-type tyrosine-protein phosphatase delta
著者Wakita, M, Yamagata, A, Fukai, S.
登録日2019-07-19
公開日2020-02-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.911 Å)
主引用文献Structural insights into selective interaction between type IIa receptor protein tyrosine phosphatases and Liprin-alpha.
Nat Commun, 11, 2020
2RTX
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BU of 2rtx by Molmil
Solution structure of the GGQ domain of YaeJ protein from Escherichia coli
分子名称: Peptidyl-tRNA hydrolase YaeJ
著者Nameki, N, Enomoto, M, Kogure, H, Tochio, N, Guntert, P.
登録日2013-09-21
公開日2013-12-25
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ
Nucleic Acids Res., 42, 2014
3VON
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BU of 3von by Molmil
Crystalstructure of the ubiquitin protease
分子名称: Ubiquitin thioesterase OTUB1, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2
著者Sato, Y, Fukai, S.
登録日2012-01-30
公開日2012-05-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Molecular basis of Lys-63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13.
J.Biol.Chem., 287, 2012

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件を2024-04-24に公開中

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