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7CL5
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BU of 7cl5 by Molmil
The crystal structure of KanJ in complex with kanamycin B and N-oxalylglycine
Descriptor: (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE, Kanamycin B dioxygenase, N-OXALYLGLYCINE, ...
Authors:Kitayama, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2020-07-20
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Stepwise Post-glycosylation Modification of Sugar Moieties in Kanamycin Biosynthesis.
Chembiochem, 22, 2021
7CL4
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BU of 7cl4 by Molmil
The crystal structure of KanJ in complex with N-oxalylglycine
Descriptor: Kanamycin B dioxygenase, N-OXALYLGLYCINE, NICKEL (II) ION
Authors:Kitayama, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2020-07-20
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Stepwise Post-glycosylation Modification of Sugar Moieties in Kanamycin Biosynthesis.
Chembiochem, 22, 2021
7CL6
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BU of 7cl6 by Molmil
The crystal structure of KanJ in complex with neamine and N-oxalylglycine
Descriptor: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside, Kanamycin B dioxygenase, N-OXALYLGLYCINE, ...
Authors:Kitayama, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2020-07-20
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Stepwise Post-glycosylation Modification of Sugar Moieties in Kanamycin Biosynthesis.
Chembiochem, 22, 2021
7CL3
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BU of 7cl3 by Molmil
The crystal structure of KanJ in complex with kanamycin B
Descriptor: (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE, Kanamycin B dioxygenase, NICKEL (II) ION, ...
Authors:Kitayama, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2020-07-20
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Stepwise Post-glycosylation Modification of Sugar Moieties in Kanamycin Biosynthesis.
Chembiochem, 22, 2021
7CL2
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BU of 7cl2 by Molmil
The crystal structure of KanJ
Descriptor: GLYCEROL, Kanamycin B dioxygenase, NICKEL (II) ION, ...
Authors:Kitayama, Y, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2020-07-20
Release date:2021-01-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stepwise Post-glycosylation Modification of Sugar Moieties in Kanamycin Biosynthesis.
Chembiochem, 22, 2021
6JW6
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BU of 6jw6 by Molmil
The crystal structure of KanD2 in complex with NAD
Descriptor: Dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T.
Deposit date:2019-04-18
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis.
Biochemistry, 59, 2020
6JW8
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BU of 6jw8 by Molmil
The crystal structure of KanD2 in complex with NADH and 3"-deamino-3"-hydroxykanamycin B
Descriptor: (2S,3R,4S,5S,6R)-2-[(1S,2S,3R,4S,6R)-3-[(2R,3R,4R,5S,6R)-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Dehydrogenase
Authors:Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T.
Deposit date:2019-04-18
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis.
Biochemistry, 59, 2020
6JW7
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BU of 6jw7 by Molmil
The crystal structure of KanD2 in complex with NADH and 3"-deamino-3"-hydroxykanamycin A
Descriptor: (2R,3S,4S,5R,6R)-2-(aminomethyl)-6-[(1R,2S,3S,4R,6S)-4,6-bis(azanyl)-3-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxane-3,4,5-triol, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Dehydrogenase
Authors:Kudo, F, Kitayama, Y, Miyanaga, A, Hirayama, A, Eguchi, T.
Deposit date:2019-04-18
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Biochemical and structural analysis of a dehydrogenase, KanD2, and an aminotransferase, KanS2, that are responsible for the construction of the kanosamine moiety in kanamycin biosynthesis.
Biochemistry, 59, 2020

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PDB entries from 2024-05-15

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