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1UF3
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BU of 1uf3 by Molmil
Crystal structure of TT1561 of thermus thermophilus HB8
分子名称: CALCIUM ION, hypothetical protein TT1561
著者Kato-Murayama, M, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-23
公開日2003-11-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of TT1561 of thermus thermophilus HB8
To be Published
1WFX
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BU of 1wfx by Molmil
Crystal Structure of APE0204 from Aeropyrum pernix
分子名称: CHLORIDE ION, Probable RNA 2'-phosphotransferase, ZINC ION
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-27
公開日2004-11-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the RNA 2'-Phosphotransferase from Aeropyrum pernix K1
J.Mol.Biol., 348, 2005
1WD6
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BU of 1wd6 by Molmil
crystal structure of JW1657 from Escherichia coli
分子名称: Protein ydhR
著者Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-12
公開日2004-11-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献crystal structure of JW1657 from Escherichia coli
To be Published
2CWK
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BU of 2cwk by Molmil
Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
分子名称: nucleoside-diphosphate kinase
著者Kato-Murayama, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-21
公開日2005-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
To be Published
2CV8
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BU of 2cv8 by Molmil
Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
分子名称: CHLORIDE ION, tRNA-splicing endonuclease
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-01
公開日2005-12-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
To be Published
2DXF
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BU of 2dxf by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
分子名称: CHLORIDE ION, Nucleoside diphosphate kinase, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
To be Published
2DY9
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BU of 2dy9 by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-08
公開日2007-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with ADP
To be Published
2DXA
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BU of 2dxa by Molmil
Crystal structure of trans editing enzyme ProX from E.coli
分子名称: CHLORIDE ION, Protein ybaK
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal structure of trans editing enzyme ProX from E.coli
To be Published
2DYC
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BU of 2dyc by Molmil
Crystal structure of the N-terminal domain of mouse galectin-4
分子名称: Galectin-4
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-08
公開日2007-10-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the N-terminal domain of mouse galectin-4
To be Published
2DXD
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BU of 2dxd by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nucleoside diphosphate kinase
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
To be Published
2DYA
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BU of 2dya by Molmil
Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-08
公開日2007-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
To be Published
2DXE
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BU of 2dxe by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with GDP
分子名称: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with GDP
To be Published
8I5L
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BU of 8i5l by Molmil
Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analysis of the GI.9 and GI.4 noroviruses by cryo-electron microscopy and X-ray crystallography reveals binding sites for human monoclonal antibody
To be published
2CXA
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BU of 2cxa by Molmil
Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli
分子名称: Leucyl/phenylalanyl-tRNA-protein transferase
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-28
公開日2005-12-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli
Protein Sci., 16, 2007
5Y7Z
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BU of 5y7z by Molmil
Complex structure of cyclin G-associated kinase with gefitinib
分子名称: Cyclin-G-associated kinase, Gefitinib, NANOBODY, ...
著者Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2017-08-18
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
5Y80
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BU of 5y80 by Molmil
Complex structure of cyclin G-associated kinase with gefitinib
分子名称: Cyclin-G-associated kinase, Gefitinib, NANOBODY
著者Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2017-08-18
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
3QHE
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BU of 3qhe by Molmil
Crystal structure of the complex between the armadillo repeat domain of adenomatous polyposis coli and the tyrosine-rich domain of Sam68
分子名称: Adenomatous polyposis coli protein, KH domain-containing, RNA-binding, ...
著者Morishita, E.C.J, Murayama, K, Kato-Murayama, M, Ishizuku-Katsura, Y, Tomabechi, Y, Terada, T, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-01-25
公開日2011-11-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
4YN3
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BU of 4yn3 by Molmil
Crystal structure of Cucumisin complex with pro-peptide
分子名称: CHLORIDE ION, Cucumisin, DI(HYDROXYETHYL)ETHER, ...
著者Murayama, K, Kato-Murayama, M, Yokoyama, S, Arima, K, Shirouzu, M.
登録日2015-03-09
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis of cucumisin protease activity regulation by its propeptide
J. Biochem., 161, 2017
5C2K
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BU of 5c2k by Molmil
Crystal structure of the fusion protein linked by RhoA and the GAP domain of MgcRacGAP
分子名称: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Murayama, K, Kato-Murayama, M, Hosaka, T, Kitamura, T, Yokoyama, S, Shirouzu, M.
登録日2015-06-16
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structural basis of G-protein target alternation of MgcRacGAP by phospholylation
To Be Published
5C2J
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BU of 5c2j by Molmil
Complex structure of the GAP domain of MgcRacGAP and Cdc42
分子名称: ALUMINUM FLUORIDE, Cell division control protein 42 homolog, GUANOSINE-5'-DIPHOSPHATE, ...
著者Murayama, K, Kato-Murayama, M, Hosaka, T, Kitamura, T, Yokoyama, S, Shirouzu, M.
登録日2015-06-16
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of G-protein target alternation of MgcRacGAP by phospholylation
To Be Published
8I90
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BU of 8i90 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with UDP-glucose
分子名称: Glycosyltransferase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2023-02-06
公開日2024-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I94
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BU of 8i94 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with luteolin
分子名称: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Glycosyltransferase, SULFATE ION
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2023-02-06
公開日2024-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I8Z
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BU of 8i8z by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, apo form
分子名称: Glycosyltransferase, SULFATE ION
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2023-02-06
公開日2024-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
3VU8
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BU of 3vu8 by Molmil
Metionyl-tRNA synthetase from Thermus thermophilus complexed with methionyl-adenylate analogue
分子名称: Methionine--tRNA ligase, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE, ZINC ION
著者Konno, M, Kato-Murayama, M, Toma-Fukai, S, Uchikawa, E, Nureki, O, Yokoyama, S.
登録日2012-06-22
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published
7EJN
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BU of 7ejn by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-HKU1) spike protein
分子名称: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2021-04-02
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021

 

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