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1Z6I
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BU of 1z6i by Molmil
Crystal structure of the ectodomain of Drosophila transmembrane receptor PGRP-LCa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Peptidoglycan-recognition protein-LC, SULFATE ION
著者Chang, C.-I, Ihara, K, Chelliah, Y, Mengin-Lecreulx, D, Wakatsuki, S, Deisenhofer, J.
登録日2005-03-22
公開日2005-07-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
Proc.Natl.Acad.Sci.Usa, 102, 2005
4FW9
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BU of 4fw9 by Molmil
Crystal structure of the Lon-like protease MtaLonC
分子名称: PHOSPHATE ION, TTC1975 peptidase
著者Chang, C.I, Ihara, K, Kuo, C.I, Huang, K.F, Wakatsuki, S.
登録日2012-06-30
公開日2013-06-26
最終更新日2013-09-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors
Acta Crystallogr.,Sect.D, 69, 2013
2DWX
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BU of 2dwx by Molmil
Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif
分子名称: ADP-ribosylation factor-binding protein GGA1, hinge peptide from ADP-ribosylation factor binding protein GGA1
著者Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2006-08-21
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
2DWY
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BU of 2dwy by Molmil
Crystal Structure Analysis of GGA1-GAE
分子名称: ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1
著者Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2006-08-21
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
7D8E
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BU of 7d8e by Molmil
Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09
分子名称: 1,2-ETHANEDIOL, Glutaminyl-peptide cyclotransferase, SULFATE ION, ...
著者Dileep, K.V, Ihara, K, Sakai, N, Shirozu, M, Zhang, K.Y.J.
登録日2020-10-08
公開日2021-12-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09
To Be Published
2Z44
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BU of 2z44 by Molmil
Crystal Structure of Selenomethionine-labeled ORF134
分子名称: ORF134
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of ORF134
To be Published
2Z46
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BU of 2z46 by Molmil
Crystal Structure of Native-ORF134
分子名称: ORF134
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献Crystal Structure of ORF134
To be Published
2Z45
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BU of 2z45 by Molmil
Crystal Structure of Zn-bound ORF134
分子名称: ORF134, ZINC ION
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structure of ORF134
To be Published
2DHT
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BU of 2dht by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7
分子名称: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase
著者Kondo, H, Murakami, M, Ihara, K, Suzuki, S, Kouyama, T.
登録日2006-03-25
公開日2007-03-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of isocitrate dehydrogenase of Sulfolobus tokodaii strain7
To be Published
2EFC
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BU of 2efc by Molmil
Ara7-GDP/AtVps9a
分子名称: GUANOSINE-5'-DIPHOSPHATE, Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like
著者Uejima, T, Ihara, K, Goh, T, Ito, E, Sunada, M, Ueda, T, Nakano, A, Wakatsuki, S.
登録日2007-02-22
公開日2008-02-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2EFD
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BU of 2efd by Molmil
Ara7/AtVps9a
分子名称: Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like
著者Uejima, T, Ihara, K, Wakatsuki, S.
登録日2007-02-22
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
3BC1
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BU of 3bc1 by Molmil
Crystal Structure of the complex Rab27a-Slp2a
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-27A, ...
著者Chavas, L.M.G, Ihara, K, Kawasaki, M, Wakatsuki, S.
登録日2007-11-12
公開日2008-09-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
4W4Q
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BU of 4w4q by Molmil
Glucose isomerase structure determined by serial femtosecond crystallography at SACLA
分子名称: CALCIUM ION, Xylose isomerase
著者Nango, E, Tanaka, T, Sugahara, M, Suzuki, M, Iwata, S.
登録日2014-08-15
公開日2014-11-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Grease matrix as a versatile carrier of proteins for serial crystallography
Nat.Methods, 12, 2015
4JR8
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BU of 4jr8 by Molmil
Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution
分子名称: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
著者Kouyama, T, Chan, S.K.
登録日2013-03-21
公開日2014-03-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
6JPP
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BU of 6jpp by Molmil
Solution structure of ELMO1 RBD
分子名称: Engulfment and cell motility protein 1
著者Tsuda, K, Kukimoto-Niino, M, Shirouzu, M.
登録日2019-03-27
公開日2020-04-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Targeting Ras-binding domain of ELMO1 by computational nanobody design.
Commun Biol, 6, 2023
4L35
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BU of 4l35 by Molmil
Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution
分子名称: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
著者Kouyama, T, Chan, S.K.
登録日2013-06-05
公開日2014-06-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
5ETZ
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BU of 5etz by Molmil
Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
著者Kouyama, T.
登録日2015-11-18
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
5B0W
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BU of 5b0w by Molmil
Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
著者Kouyama, T, Chan, S.K.
登録日2015-11-11
公開日2016-07-27
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
6AJ4
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BU of 6aj4 by Molmil
Crystal structure of the DHR-2 domain of DOCK7 in complex with Cdc42
分子名称: Cell division control protein 42 homolog, Dedicator of cytokinesis protein 7
著者Kukimoto-Niino, M, Shirouzu, M.
登録日2018-08-27
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.256 Å)
主引用文献Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor.
Structure, 27, 2019
6AJL
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BU of 6ajl by Molmil
DOCK7 mutant I1836Y complexed with Cdc42
分子名称: Cell division control protein 42 homolog, Dedicator of cytokinesis protein 7
著者Kukimoto-Niino, M, Shirouzu, M.
登録日2018-08-28
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor.
Structure, 27, 2019
8I5L
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BU of 8i5l by Molmil
Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies.
J.Virol., 2024
8JG5
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BU of 8jg5 by Molmil
Cryo-EM structure of the GI.4 Chiba VLP complexed with the CV-1A1 Fv-clasp
分子名称: VH,SARAH, VL,SARAH, VP1
著者Hosaka, T, Katsura, K, Kimura-Someya, T, Someya, Y, Shirouzu, M.
登録日2023-05-19
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography reveal binding sites for human monoclonal antibodies
To Be Published
7VGV
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BU of 7vgv by Molmil
Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure determined by serial femtosecond crystallography at SACLA
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, HEXADECANE, ...
著者Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
登録日2021-09-18
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VGU
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BU of 7vgu by Molmil
Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3 : structure obtained 1 msec after photoexcitation with bromide ion
分子名称: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ...
著者Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
登録日2021-09-18
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VGT
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BU of 7vgt by Molmil
Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3: resting state structure with bromide ion
分子名称: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ...
著者Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
登録日2021-09-18
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022

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