Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1VTT
DownloadVisualize
BU of 1vtt by Molmil
GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)
分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
著者Ho, P.S, Frederick, C.A, Quigley, G.J, Van Der Marel, G.A, Van Boom, J.H, Wang, A.H.-J, Rich, A.
登録日1988-08-18
公開日2011-07-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)
Embo J., 4, 1985
4GRE
DownloadVisualize
BU of 4gre by Molmil
DNA holliday junction stabilized by iodine halogen bond. I2J Construct of related reference
分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(IOU)P*CP*GP*G)-3')
著者Ho, P.S, Carter, M.
登録日2012-08-24
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSI
DownloadVisualize
BU of 4gsi by Molmil
DNA Holliday junction stabilized by fluorine halogen bond. F2J construct of related reference.
分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UFP)P*CP*GP*G)-3')
著者Ho, P.S, Carter, M.
登録日2012-08-27
公開日2013-07-31
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GS2
DownloadVisualize
BU of 4gs2 by Molmil
DNA Holliday junction stabilized by iodine halogen bond. I1J construct in related reference.
分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(5IU)P*CP*GP*G)-3')
著者Ho, P.S, Carter, M.
登録日2012-08-27
公開日2013-07-31
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSG
DownloadVisualize
BU of 4gsg by Molmil
DNA Holliday junction stabilized by chlorine halogen bond. Cl1J construct of related reference.
分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UCL)P*CP*GP*G)-3')
著者Ho, P.S, Carter, M.
登録日2012-08-27
公開日2013-07-31
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
1D40
DownloadVisualize
BU of 1d40 by Molmil
BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2
分子名称: COPPER (II) CHLORIDE, COPPER (II) ION, DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3')
著者Geierstanger, B.H, Kagawa, T.F, Chen, S.-L, Quigley, G.J, Ho, P.S.
登録日1991-05-07
公開日1992-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1FHZ
DownloadVisualize
BU of 1fhz by Molmil
PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION
分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3')
著者Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S.
登録日2000-08-02
公開日2001-04-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
1FHY
DownloadVisualize
BU of 1fhy by Molmil
PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION
分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION, DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3')
著者Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S.
登録日2000-08-02
公開日2001-04-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
400D
DownloadVisualize
BU of 400d by Molmil
THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA
分子名称: DNA (5'-D(*(5CM)P*GP*GP*CP*(5CM)P*G)-3')
著者Eichman, B.F, Basham, B, Schroth, G.P, Ho, P.S.
登録日1998-05-28
公開日1998-07-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA.
Nucleic Acids Res., 27, 1999
1D41
DownloadVisualize
BU of 1d41 by Molmil
STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG)
分子名称: DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3'), MAGNESIUM ION
著者Zhou, G, Ho, P.S.
登録日1991-05-07
公開日1992-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG).
Biochemistry, 29, 1990
1D39
DownloadVisualize
BU of 1d39 by Molmil
COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2
分子名称: COPPER (II) ION, DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3'), SODIUM ION
著者Kagawa, T.F, Geierstanger, B.H, Wang, A.H.-J, Ho, P.S.
登録日1991-05-07
公開日1992-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Covalent modification of guanine bases in double-stranded DNA. The 1.2-A Z-DNA structure of d(CGCGCG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1DCV
DownloadVisualize
BU of 1dcv by Molmil
B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE
分子名称: DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3')
著者Eichman, B.F, Vargason, J.M, Mooers, B.H.M, Ho, P.S.
登録日1999-11-05
公開日2000-04-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1DCW
DownloadVisualize
BU of 1dcw by Molmil
STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
分子名称: DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), SODIUM ION
著者Eichman, B.F, Vargason, J.M, Mooers, B.H.M, Ho, P.S.
登録日1999-11-05
公開日2000-04-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1F69
DownloadVisualize
BU of 1f69 by Molmil
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), MAGNESIUM ION
著者Vargason, J.M, Eichman, B.F, Ho, P.S.
登録日2000-06-20
公開日2000-08-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6C
DownloadVisualize
BU of 1f6c by Molmil
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE
分子名称: DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), SPERMINE
著者Vargason, J.M, Eichman, B.F, Ho, P.S.
登録日2000-06-21
公開日2000-08-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6E
DownloadVisualize
BU of 1f6e by Molmil
CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
分子名称: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
著者Vargason, J.M, Eichman, B.F, Ho, P.S.
登録日2000-06-21
公開日2000-08-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6I
DownloadVisualize
BU of 1f6i by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGM5CC
分子名称: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
著者Vargason, J.M, Eichman, B.F, Ho, P.S.
登録日2000-06-21
公開日2000-08-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6J
DownloadVisualize
BU of 1f6j by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGBR5CC
分子名称: DNA (5'-D(*GP*GP*CP*GP*(CBR)P*C)-3')
著者Vargason, J.M, Eichman, B.F, Ho, P.S.
登録日2000-06-21
公開日2000-08-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1S1L
DownloadVisualize
BU of 1s1l by Molmil
Influence of Groove Interactions on the Formation of DNA Holliday Junctions
分子名称: 5'-D(*CP*CP*(OIP)*GP*TP*AP*CP*(5CM)P*GP*G)-3'
著者Hays, F.A, Jones, Z.J, Ho, P.S.
登録日2004-01-06
公開日2004-08-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Influence of minor groove substituents on the structure of DNA holliday junctions.
Biochemistry, 43, 2004
1S1K
DownloadVisualize
BU of 1s1k by Molmil
INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION
分子名称: 5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3', CALCIUM ION, SODIUM ION
著者Hays, F.A, Watson, J, Ho, P.S.
登録日2004-01-06
公開日2004-08-31
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Influence of minor groove substituents on the structure of DNA holliday junctions.
Biochemistry, 43, 2004
3IGT
DownloadVisualize
BU of 3igt by Molmil
A rare nucleotide base tautomer in the structure of an asymmetric DNA junction
分子名称: 5'-D(*CP*CP*GP*AP*GP*TP*CP*CP*TP*A)-3', 5'-D(*CP*TP*CP*AP*AP*CP*TP*CP*GP*G)-3', 5'-D(*TP*AP*GP*GP*GP*GP*CP*CP*GP*A)-3', ...
著者Khuu, P, Ho, P.S.
登録日2009-07-28
公開日2009-08-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A rare nucleotide base tautomer in the structure of an asymmetric DNA junction.
Biochemistry, 48, 2009
1IH2
DownloadVisualize
BU of 1ih2 by Molmil
Crystal Structure of GGBr5CGBr5CC
分子名称: 5'-D(*GP*GP*(CBR)P*GP*(CBR)P*C)-3'
著者Vargason, J.M, Henderson, K, Ho, P.S.
登録日2001-04-18
公開日2001-06-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH3
DownloadVisualize
BU of 1ih3 by Molmil
Multi-conformation crystal structure of GGm5CGm5CC
分子名称: 5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3'
著者Vargason, J.M, Henderson, K, Ho, P.S.
登録日2001-04-18
公開日2001-06-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH4
DownloadVisualize
BU of 1ih4 by Molmil
Multi-Conformation Crystal Structure of GGm5CGCC
分子名称: 5'-D(*GP*GP*(5CM)P*GP*CP*C)-3'
著者Vargason, J.M, Henderson, K, Ho, P.S.
登録日2001-04-18
公開日2001-06-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH1
DownloadVisualize
BU of 1ih1 by Molmil
Crystal Structure of the B-DNA Hexamer GGCGCC with Cobalt Hexamine Resolved to 2.0 Angstroms
分子名称: 5'-D(*GP*GP*CP*GP*CP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
著者Vargason, J.M, Henderson, K, Ho, P.S.
登録日2001-04-18
公開日2001-06-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001

 

1234>

218853

件を2024-04-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon