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5H12
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BU of 5h12 by Molmil
Crystal structure of Deep Vent DNA Polymerase
Descriptor: Deep Vent DNA Polymerase
Authors:Hikida, Y, Kimoto, M, Hirao, I, Yokoyama, S.
Deposit date:2016-10-07
Release date:2017-01-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Crystal structure of Deep Vent DNA polymerase.
Biochem. Biophys. Res. Commun., 483, 2017
2YXL
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BU of 2yxl by Molmil
Crystal Structure of PH0851
Descriptor: 450aa long hypothetical fmu protein, SINEFUNGIN
Authors:Hikida, Y, Kuratani, M, Bessho, Y, Ishii, R, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase
Acta Crystallogr.,Sect.D, 66, 2010
3AJD
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BU of 3ajd by Molmil
Crystal structure of ATRM4
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Putative methyltransferase MJ0026
Authors:Hirano, M, Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-06-01
Release date:2010-06-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
J.Mol.Biol., 401, 2010
5XVR
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BU of 5xvr by Molmil
EarP bound with dTDP-rhamnose (co-crystal)
Descriptor: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE, EarP, SULFATE ION
Authors:Sengoku, T, Yokoyama, S, Yanagisawa, T.
Deposit date:2017-06-28
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP
Nat. Chem. Biol., 14, 2018
3WND
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BU of 3wnd by Molmil
Crystal structure of EF-Pyl
Descriptor: CITRIC ACID, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3A4T
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BU of 3a4t by Molmil
Crystal structure of aTrm4 from M.jannaschii with sinefungin
Descriptor: Putative methyltransferase MJ0026, SINEFUNGIN
Authors:Hirano, M, Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-14
Release date:2010-06-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
J.Mol.Biol., 401, 2010
5WXI
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BU of 5wxi by Molmil
EarP bound with dTDP-rhamnose (soaked)
Descriptor: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE, BETA-MERCAPTOETHANOL, EarP, ...
Authors:Sengoku, T, Yokoyama, S, Yanagisawa, T.
Deposit date:2017-01-07
Release date:2018-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP
Nat. Chem. Biol., 14, 2018
5WXJ
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BU of 5wxj by Molmil
Apo EarP
Descriptor: BETA-MERCAPTOETHANOL, EarP, GLYCEROL, ...
Authors:Sengoku, T, Yokoyama, S, Yanagisawa, T.
Deposit date:2017-01-07
Release date:2018-02-28
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP
Nat. Chem. Biol., 14, 2018
5WXK
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BU of 5wxk by Molmil
EarP bound with domain I of EF-P
Descriptor: BETA-MERCAPTOETHANOL, EarP, Elongation factor P, ...
Authors:Sengoku, T, Yokoyama, S, Yanagisawa, T.
Deposit date:2017-01-07
Release date:2018-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP
Nat. Chem. Biol., 14, 2018
3WNC
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BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WNB
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BU of 3wnb by Molmil
Crystal structure of EF-Pyl in complex with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2020-05-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015

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PDB entries from 2024-11-06

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