Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2D3W
DownloadVisualize
BU of 2d3w by Molmil
Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery
分子名称: Probable ATP-dependent transporter sufC
著者Kitaoka, S, Wada, K, Hasegawa, Y, Minami, Y, Takahashi, Y, Fukuyama, K.
登録日2005-10-03
公開日2006-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
Febs Lett., 580, 2006
2DBW
DownloadVisualize
BU of 2dbw by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Acyl-Enzyme Intermediate
分子名称: GAMMA-L-GLUTAMIC ACID, GLYCEROL, Gamma-glutamyltranspeptidase
著者Okada, T, Wada, K, Fukuyama, K.
登録日2005-12-16
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate
Proc.Natl.Acad.Sci.USA, 103, 2006
2DBX
DownloadVisualize
BU of 2dbx by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Complexed with L-Glutamate
分子名称: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
著者Okada, T, Wada, K, Fukuyama, K.
登録日2005-12-16
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DBU
DownloadVisualize
BU of 2dbu by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli
分子名称: Gamma-glutamyltranspeptidase
著者Okada, T, Wada, K, Fukuyama, K.
登録日2005-12-16
公開日2006-04-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DG5
DownloadVisualize
BU of 2dg5 by Molmil
Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
分子名称: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
著者Okada, T, Wada, K, Fukuyama, K.
登録日2006-03-08
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2E0N
DownloadVisualize
BU of 2e0n by Molmil
Crystal structure of CbiL in complex with S-adenosylhomocysteine, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
分子名称: Precorrin-2 C20-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Wada, K, Fukuyama, K.
登録日2006-10-10
公開日2007-01-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
2E0K
DownloadVisualize
BU of 2e0k by Molmil
Crystal structure of CbiL, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
分子名称: Precorrin-2 C20-methyltransferase
著者Wada, K, Fukuyama, K.
登録日2006-10-10
公開日2007-01-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
1I7H
DownloadVisualize
BU of 1i7h by Molmil
CRYSTAL STURCUTURE OF FDX
分子名称: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
著者Kakuta, Y, Horio, T, Takahashi, Y, Fukuyama, K.
登録日2001-03-09
公開日2002-03-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
2E7E
DownloadVisualize
BU of 2e7e by Molmil
Bent-binding of cyanide to the heme iron in rat heme oxygenase-1
分子名称: CYANIDE ION, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
著者Sugishima, M, Fukuyama, K.
登録日2007-01-09
公開日2007-06-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Alternative cyanide-binding modes to the haem iron in haem oxygenase
Acta Crystallogr.,Sect.F, 63, 2007
1J2C
DownloadVisualize
BU of 1j2c by Molmil
Crystal structure of rat heme oxygenase-1 in complex with biliverdin IXalpha-iron cluster
分子名称: BILIVERDINE IX ALPHA, FE (III) ION, Heme Oxygenase-1
著者Sugishima, M, Sakamoto, H, Noguchi, M, Fukuyama, K.
登録日2002-12-29
公開日2003-09-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin-Iron Chelate: CONFORMATIONAL CHANGE OF THE DISTAL HELIX DURING THE HEME CLEAVAGE REACTION.
J.Biol.Chem., 278, 2003
1IVJ
DownloadVisualize
BU of 1ivj by Molmil
Crystal Structure of Rat Hemeoxygenase-1 in Complex with Heme and Azide.
分子名称: AZIDE ION, Hemeoxygenase-1, PROTOPORPHYRIN IX CONTAINING FE
著者Sugishima, M, Sakamoto, H, Omata, Y, Hayashi, S, Noguchi, M, Fukuyama, K.
登録日2002-03-18
公開日2002-12-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme Bound to Azide. IMPLICATION FOR REGIOSPECIFIC HYDROXYLATION OF HEME AT THE alpha -MESO CARBON
J.Biol.Chem., 277, 2002
2ZVU
DownloadVisualize
BU of 2zvu by Molmil
Crystal structure of rat heme oxygenase-1 in complex with ferrous verdoheme
分子名称: 5-OXA-PROTOPORPHYRIN IX CONTAINING FE, FORMIC ACID, Heme oxygenase 1
著者Sato, H, Sugishima, M, Fukuyama, K, Noguchi, M.
登録日2008-11-21
公開日2009-02-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of rat haem oxygenase-1 in complex with ferrous verdohaem: presence of a hydrogen-bond network on the distal side
Biochem.J., 419, 2009
2ZXL
DownloadVisualize
BU of 2zxl by Molmil
Crystal structure of red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION, ...
著者Sugishima, M, Kitamori, Y, Fukuyama, K.
登録日2008-12-29
公開日2009-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of red chlorophyll catabolite reductase: enlargement of the ferredoxin-dependent bilin reductase family
J.Mol.Biol., 389, 2009
2ZXK
DownloadVisualize
BU of 2zxk by Molmil
Crystal structure of SeMet-Red chlorophyll catabolite reductase
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION
著者Sugishima, M, Kitamori, Y, Fukuyama, K.
登録日2008-12-29
公開日2009-05-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of red chlorophyll catabolite reductase: enlargement of the ferredoxin-dependent bilin reductase family
J.Mol.Biol., 389, 2009
3AGC
DownloadVisualize
BU of 3agc by Molmil
F218V mutant of the substrate-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: 3-{(2Z,3S,4S)-5-[(Z)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-2-[(5R)-2-[(3-ethyl-5-formyl-4-methyl-1H-pyrrol-2-yl)methyl]-5-(methoxycarbonyl)-3-methyl-4-oxo-4,5-dihydrocyclopenta[b]pyrrol-6(1H)-ylidene]-4-methyl-3,4-dihydro-2H-pyrrol-3-yl}propanoic acid, Red chlorophyll catabolite reductase, chloroplastic, ...
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
3AGA
DownloadVisualize
BU of 3aga by Molmil
Crystal structure of RCC-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: 3-{(2Z,3S,4S)-5-[(Z)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-2-[(5R)-2-[(3-ethyl-5-formyl-4-methyl-1H-pyrrol-2-yl)methyl]-5-(methoxycarbonyl)-3-methyl-4-oxo-4,5-dihydrocyclopenta[b]pyrrol-6(1H)-ylidene]-4-methyl-3,4-dihydro-2H-pyrrol-3-yl}propanoic acid, Red chlorophyll catabolite reductase, chloroplastic, ...
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
3AGB
DownloadVisualize
BU of 3agb by Molmil
F218V mutant of the substrate-free form of red chlorophyll catabolite reductase from Arabidopsis thaliana
分子名称: Red chlorophyll catabolite reductase, chloroplastic, SODIUM ION
著者Sugishima, M, Fukuyama, K.
登録日2010-03-30
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction
J.Mol.Biol., 402, 2010
2D1E
DownloadVisualize
BU of 2d1e by Molmil
Crystal structure of PcyA-biliverdin complex
分子名称: BILIVERDINE IX ALPHA, Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION
著者Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
登録日2005-08-17
公開日2006-01-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DKE
DownloadVisualize
BU of 2dke by Molmil
Crystal structure of substrate-free form of PcyA
分子名称: CHLORIDE ION, Phycocyanobilin:ferredoxin oxidoreductase
著者Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
登録日2006-04-10
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006
2DY5
DownloadVisualize
BU of 2dy5 by Molmil
Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-1,3-dioxolane
分子名称: 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE, CHLORIDE ION, Heme oxygenase 1, ...
著者Sugishima, M, Takahashi, H, Fukuyama, K.
登録日2006-09-06
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase
Biochemistry, 46, 2007
4MEC
DownloadVisualize
BU of 4mec by Molmil
Crystal structure of RAT Heme oxygenase-1 in complex with ZN(II)-Protoporphyrin IX
分子名称: Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING ZN
著者Sugishima, M.
登録日2013-08-26
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations
Biochemistry, 54, 2015
5B3V
DownloadVisualize
BU of 5b3v by Molmil
Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
分子名称: BILIVERDINE IX ALPHA, Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Takao, H, Wada, K.
登録日2016-03-13
公開日2017-02-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.594 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3T
DownloadVisualize
BU of 5b3t by Molmil
Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
分子名称: Biliverdin reductase, PHOSPHATE ION
著者Takao, H, Wada, K.
登録日2016-03-12
公開日2017-02-15
最終更新日2021-08-11
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3U
DownloadVisualize
BU of 5b3u by Molmil
Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
分子名称: Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION
著者Takao, H, Wada, K.
登録日2016-03-13
公開日2017-02-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.698 Å)
主引用文献A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5AWG
DownloadVisualize
BU of 5awg by Molmil
Crystal structure of Hg-bound SufB-SufC-SufD complex from Escherichia coli
分子名称: FeS cluster assembly protein SufB, FeS cluster assembly protein SufD, MERCURY (II) ION, ...
著者Hirabayashi, K, Wada, K.
登録日2015-07-03
公開日2015-11-11
最終更新日2021-08-11
実験手法X-RAY DIFFRACTION (4.278 Å)
主引用文献Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis
J.Biol.Chem., 290, 2015

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon