Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5FLH
DownloadVisualize
BU of 5flh by Molmil
Free state of Ni-quercetinase
Descriptor: DIMETHYL SULFOXIDE, NICKEL (II) ION, NITRATE ION, ...
Authors:Jeoung, J.-H, Nianios, D, Fetzner, S, Dobbek, H.
Deposit date:2015-10-26
Release date:2016-06-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Quercetin 2,4-Dioxygenase Activates Dioxygen in a Side-on O2 -Ni Complex.
Angew.Chem.Int.Ed.Engl., 55, 2016
5I7P
DownloadVisualize
BU of 5i7p by Molmil
Crystal structure of Fkbp12-IF(SlyD), a chimeric protein of human Fkbp12 and the insert in flap domain of Ecoli SlyD
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A,FKBP-type peptidyl-prolyl cis-trans isomerase SlyD,Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Jakob, R.P, Knappe, T.A, Dobbek, H, Schmid, F.X.
Deposit date:2016-02-18
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structural and Functional Analysis of Chaperone Domain Insertion in Fkbp12
To Be Published
3ZYY
DownloadVisualize
BU of 3zyy by Molmil
Reductive activator for corrinoid,iron-sulfur protein
Descriptor: (R,R)-2,3-BUTANEDIOL, FE2/S2 (INORGANIC) CLUSTER, IRON-SULFUR CLUSTER BINDING PROTEIN, ...
Authors:Hennig, S.E, Jeoung, J.-H, Goetzl, S, Dobbek, H.
Deposit date:2011-08-30
Release date:2012-04-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Redox-Dependent Complex Formation by an ATP-Dependent Activator of the Corrinoid/Iron-Sulfur Protein.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZDS
DownloadVisualize
BU of 3zds by Molmil
Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen.
Descriptor: 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID, 2-(6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl)ethanoic acid, 2-[(6R)-6-(dioxidanyl)-6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]ethanoic acid, ...
Authors:Jeoung, J.-H, Bommer, M, Lin, T.-Y, Dobbek, H.
Deposit date:2012-11-30
Release date:2013-07-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase
Proc.Natl.Acad.Sci.USA, 110, 2013
5I7Q
DownloadVisualize
BU of 5i7q by Molmil
Crystal structure of Fkbp12-IF(SlpA), a chimeric protein of human Fkbp12 and the insert in flap domain of Ecoli SlpA
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A,FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase,Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Jakob, R.P, Dobbek, H, Schmid, F.X.
Deposit date:2016-02-18
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Analysis of Chaperone Domain Insertion in Fkbp12
To Be Published
4AQ4
DownloadVisualize
BU of 4aq4 by Molmil
substrate bound sn-glycerol-3-phosphate binding periplasmic protein ugpB from Escherichia coli
Descriptor: CADMIUM ION, COBALT (II) ION, GLYCEROL, ...
Authors:Wuttge, S, Bommer, M, Jaeger, F, Martins, B.M, Jacob, S, Licht, A, Scheffel, F, Dobbek, H, Schneider, E.
Deposit date:2012-04-13
Release date:2012-10-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determinants of Substrate Specificity and Biochemical Properties of the Sn-Glycerol-3-Phosphate ATP Binding Cassette Transporter (Ugpb-Aec(2) ) of Escherichia Coli.
Mol.Microbiol., 86, 2012
4AQ6
DownloadVisualize
BU of 4aq6 by Molmil
substrate bound homogentisate 1,2-dioxygenase
Descriptor: 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, ...
Authors:Jeoung, J.-H, Lin, T.-Y, Bommer, M, Dobbek, H.
Deposit date:2012-04-12
Release date:2013-04-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase
Proc.Natl.Acad.Sci.USA, 110, 2013
4AQ2
DownloadVisualize
BU of 4aq2 by Molmil
resting state of homogentisate 1,2-dioxygenase
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, HOMOGENTISATE 1,2-DIOXYGENASE
Authors:Jeoung, J.-H, Lin, T.-Y, Bommer, M, Dobbek, H.
Deposit date:2012-04-12
Release date:2013-04-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing the Substrate-, Superoxo-, Alkylperoxo-, and Product-Bound States at the Nonheme Fe(II) Site of Homogentisate Dioxygenase.
Proc.Natl.Acad.Sci.USA, 110, 2013
5MX2
DownloadVisualize
BU of 5mx2 by Molmil
Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Zhang, M, Bommer, M, Chatterjee, R, Hussain, R, Kern, J, Yano, J, Dau, H, Dobbek, H, Zouni, A.
Deposit date:2017-01-20
Release date:2017-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Structural insights into the light-driven auto-assembly process of the water-oxidizing Mn4CaO5-cluster in photosystem II.
Elife, 6, 2017
2X9A
DownloadVisualize
BU of 2x9a by Molmil
crystal structure of g3p from phage IF1 in complex with its coreceptor, the C-terminal domain of TolA
Descriptor: ATTACHMENT PROTEIN G3P, MEMBRANE SPANNING PROTEIN, REQUIRED FOR OUTER MEMBRANE INTEGRITY
Authors:Lorenz, S.H, Jakob, R.P, Dobbek, H, Schmid, F.X.
Deposit date:2010-03-15
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:The Filamentous Phages Fd and If1 Use Different Mechanisms to Infect Escherichia Coli.
J.Mol.Biol., 405, 2011
2X9B
DownloadVisualize
BU of 2x9b by Molmil
The filamentous phages fd and IF1 use different infection mechanisms
Descriptor: ATTACHMENT PROTEIN G3P
Authors:Lorenz, S.H, Jakob, R.P, Weininger, U, Dobbek, H, Schmid, F.X.
Deposit date:2010-03-15
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:The Filamentous Phages Fd and If1 Use Different Mechanisms to Infect Escherichia Coli.
J.Mol.Biol., 405, 2011
2YIV
DownloadVisualize
BU of 2yiv by Molmil
NI,FE-CODH with n-butylisocyanate state
Descriptor: CARBON MONOXIDE DEHYDROGENASE 2, FE (III) ION, FE(3)-NI(1)-S(4) CLUSTER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2011-05-16
Release date:2012-03-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:N-Butyl Isocyanide Oxidation at the [Nife4S4Oh(X)] Cluster of Co Dehydrogenase.
J.Biol.Inorg.Chem., 17, 2012
2YCK
DownloadVisualize
BU of 2yck by Molmil
methyltransferase bound with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, GLYCEROL, ...
Authors:Goetzl, S, Jeoung, J.-H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCJ
DownloadVisualize
BU of 2ycj by Molmil
methyltransferase bound with methyltetrahydrofolate
Descriptor: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, GLYCEROL, ...
Authors:Goetzl, S, Jeoung, J.-H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCI
DownloadVisualize
BU of 2yci by Molmil
methyltransferase native
Descriptor: 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, SULFATE ION
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCL
DownloadVisualize
BU of 2ycl by Molmil
complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster
Descriptor: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT, CO DEHYDROGENASE/ACETYL-COA SYNTHASE, ...
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
3KJH
DownloadVisualize
BU of 3kjh by Molmil
Zn-bound state of CooC1
Descriptor: CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ZINC ION
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3KNQ
DownloadVisualize
BU of 3knq by Molmil
Beta Turn Optimization of the Gene-3-Protein of Filamentous Phage Fd
Descriptor: Attachment protein G3P
Authors:Jakob, R.P, Dobbek, H.
Deposit date:2009-11-12
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Elimination of a cis-proline-containing loop and turn optimization stabilizes a protein and accelerates its folding.
J.Mol.Biol., 399, 2010
3KJG
DownloadVisualize
BU of 3kjg by Molmil
ADP-bound state of CooC1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3KJE
DownloadVisualize
BU of 3kje by Molmil
Empty state of CooC1
Descriptor: CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3KJI
DownloadVisualize
BU of 3kji by Molmil
Zn and ADP bound state of CooC1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3L5L
DownloadVisualize
BU of 3l5l by Molmil
Xenobiotic Reductase A - oxidized
Descriptor: (R,R)-2,3-BUTANEDIOL, FLAVIN MONONUCLEOTIDE, SULFATE ION, ...
Authors:Spiegelhauer, O, Dobbek, H.
Deposit date:2009-12-22
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Cysteine as a modulator residue in the active site of xenobiotic reductase A: a structural, thermodynamic and kinetic study
J.Mol.Biol., 398, 2010
3L68
DownloadVisualize
BU of 3l68 by Molmil
Xenobiotic Reductase A - C25S variant with coumarin
Descriptor: (R,R)-2,3-BUTANEDIOL, COUMARIN, FLAVIN MONONUCLEOTIDE, ...
Authors:Spiegelhauer, O, Dobbek, H.
Deposit date:2009-12-23
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Cysteine as a modulator residue in the active site of xenobiotic reductase A: a structural, thermodynamic and kinetic study
J.Mol.Biol., 398, 2010
3L66
DownloadVisualize
BU of 3l66 by Molmil
Xenobiotic Reductase A - C25A Variant with Coumarin
Descriptor: (R,R)-2,3-BUTANEDIOL, COUMARIN, FLAVIN MONONUCLEOTIDE, ...
Authors:Spiegelhauer, O, Dobbek, H.
Deposit date:2009-12-23
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Cysteine as a modulator residue in the active site of xenobiotic reductase A: a structural, thermodynamic and kinetic study
J.Mol.Biol., 398, 2010
3L5M
DownloadVisualize
BU of 3l5m by Molmil
Xenobiotic reductase A - coumarin bound
Descriptor: (R,R)-2,3-BUTANEDIOL, COUMARIN, FLAVIN MONONUCLEOTIDE, ...
Authors:Spiegelhauer, O, Dobbek, H.
Deposit date:2009-12-22
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Cysteine as a modulator residue in the active site of xenobiotic reductase A: a structural, thermodynamic and kinetic study
J.Mol.Biol., 398, 2010

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon