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8Q1B
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BU of 8q1b by Molmil
III2-IV1 respiratory supercomplex from S. pombe
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, CALCIUM ION, CARDIOLIPIN, ...
著者Moe, A, Brzezinski, P.
登録日2023-07-31
公開日2023-11-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure and function of the S. pombe III-IV-cyt c supercomplex.
Proc.Natl.Acad.Sci.USA, 120, 2023
6HWH
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BU of 6hwh by Molmil
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
分子名称: CARDIOLIPIN, COPPER (II) ION, Co-purified unknown peptide built as polyALA, ...
著者Wiseman, B, Nitharwal, R.G, Fedotovskaya, O, Schafer, J, Guo, H, Kuang, Q, Benlekbir, S, Sjostrand, D, Adelroth, P, Rubinstein, J.L, Brzezinski, P, Hogbom, M.
登録日2018-10-12
公開日2018-11-07
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of a functional obligate complex III2IV2respiratory supercomplex from Mycobacterium smegmatis.
Nat. Struct. Mol. Biol., 25, 2018
1DY7
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Cytochrome cd1 Nitrite Reductase, CO complex
分子名称: CARBON MONOXIDE, GLYCEROL, HEME C, ...
著者Sjogren, T, Svensson-Ek, M, Hajdu, J, Brzezinski, P.
登録日2000-01-28
公開日2000-09-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Proton-Coupled Structural Changes Upon Binding of Carbon Monoxide to Cytochrome Cd(1): A Combined Flash Photolysis and X-Ray Crystallography Study
Biochemistry, 39, 2000
5NF8
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BU of 5nf8 by Molmil
Solution structure of detergent-solubilized Rcf1, a yeast mitochondrial inner membrane protein involved in respiratory Complex III/IV supercomplex formation
分子名称: Respiratory supercomplex factor 1, mitochondrial
著者Zhou, S, Pettersson, P, Sjoholm, J, Sjostrand, D, Hogbom, M, Brzezinski, P, Maler, L, Adelroth, P.
登録日2017-03-13
公開日2018-02-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5AE5
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BU of 5ae5 by Molmil
Structures of inactive and activated DntR provide conclusive evidence for the mechanism of action of LysR transcription factors
分子名称: GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
著者Lerche, M, Dian, C, Round, A, Lonneborg, R, Brzezinski, P, Leonard, G.A.
登録日2015-08-25
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.645 Å)
主引用文献The Solution Configurations of Inactive and Activated Dntr Have Implications for the Sliding Dimer Mechanism of Lysr Transcription Factors.
Sci.Rep., 6, 2016
5AE4
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BU of 5ae4 by Molmil
Structures of inactive and activated DntR provide conclusive evidence for the mechanism of action of LysR transcription factors
分子名称: LYSR-TYPE REGULATORY PROTEIN, THIOCYANATE ION
著者Lerche, M, Dian, C, Round, A, Lonneborg, R, Brzezinski, P, Leonard, G.A.
登録日2015-08-25
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The Solution Configurations of Inactive and Activated Dntr Have Implications for the Sliding Dimer Mechanism of Lysr Transcription Factors.
Sci.Rep., 6, 2016
1UTB
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BU of 1utb by Molmil
DntR from Burkholderia sp. strain DNT
分子名称: ACETATE ION, GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
著者Smirnova, I.A, Dian, C, Leonard, G.A, McSweeney, S, Birse, D, Brzezinski, P.
登録日2003-12-05
公開日2004-07-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Development of a Bacterial Biosensor for Nitrotoluenes: The Crystal Structure of the Transcriptional Regulator Dntr
J.Mol.Biol., 340, 2004
1UTH
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BU of 1uth by Molmil
DntR from Burkholderia sp. strain DNT in complex with Thiocyanate
分子名称: LYSR-TYPE REGULATORY PROTEIN, THIOCYANATE ION
著者Smirnova, I.A, Dian, C, Leonard, G.A, McSweeney, S, Birse, D, Brzezinski, P.
登録日2003-12-09
公開日2004-07-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Development of a Bacterial Biosensor for Nitrotoluenes: The Crystal Structure of the Transcriptional Regulator Dntr
J.Mol.Biol., 340, 2004
2UYF
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BU of 2uyf by Molmil
Single mutant F111L DntR from Burkholderia sp. strain DNT in complex with thiocyanate
分子名称: ACETATE ION, GLYCEROL, REGULATORY PROTEIN, ...
著者Lonneborg, R, Smirova, I, Dian, C, Leonard, G.A, Mcsweeney, S, Brzezinski, P.
登録日2007-04-04
公開日2007-08-21
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr.
J.Mol.Biol., 372, 2007
2UYE
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BU of 2uye by Molmil
Double mutant Y110S,F111V DntR from Burkholderia sp. strain DNT in complex with thiocyanate
分子名称: GLYCEROL, REGULATORY PROTEIN, THIOCYANATE ION
著者Lonneborg, R, Smirova, I, Dian, C, leonard, G.A, McSweeney, S, Brzezinski, P.
登録日2007-04-04
公開日2007-08-21
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr.
J.Mol.Biol., 372, 2007
8C8Q
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BU of 8c8q by Molmil
Cytochrome c oxidase from Schizosaccharomyces pombe
分子名称: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase polypeptide 5, ...
著者Moe, A, Adelroth, P, Brzezinski, P, Nasvik Ojemyr, L.
登録日2023-01-20
公開日2023-03-01
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Cryo-EM structure and function of S. pombe complex IV with bound respiratory supercomplex factor.
Commun Chem, 6, 2023
7Q21
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BU of 7q21 by Molmil
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
分子名称: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P.
登録日2021-10-22
公開日2022-02-02
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The respiratory supercomplex from C. glutamicum.
Structure, 30, 2022
2Y7W
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BU of 2y7w by Molmil
DntR Inducer Binding Domain
分子名称: 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN, TETRAETHYLENE GLYCOL
著者Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
登録日2011-02-02
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7K
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BU of 2y7k by Molmil
DntR Inducer Binding Domain in Complex with Salicylate. Monoclinic crystal form
分子名称: 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN
著者Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
登録日2011-01-31
公開日2011-07-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7P
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BU of 2y7p by Molmil
DntR Inducer Binding Domain in Complex with Salicylate. Trigonal crystal form
分子名称: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, 2-HYDROXYBENZOIC ACID, LYSR-TYPE REGULATORY PROTEIN
著者Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
登録日2011-02-01
公開日2011-07-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y84
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BU of 2y84 by Molmil
DntR Inducer Binding Domain
分子名称: GLYCEROL, LYSR-TYPE REGULATORY PROTEIN
著者Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
登録日2011-02-03
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
2Y7R
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BU of 2y7r by Molmil
DntR Inducer Binding Domain
分子名称: LYSR-TYPE REGULATORY PROTEIN
著者Devesse, L, Smirnova, I, Lonneborg, R, Kapp, U, Brzezinski, P, Leonard, G.A, Dian, C.
登録日2011-02-01
公開日2011-12-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators.
Mol.Microbiol., 81, 2011
6ZDB
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BU of 6zdb by Molmil
NMR structural analysis of yeast Cox13 reveals its C-terminus in interaction with ATP
分子名称: Cytochrome c oxidase subunit 13, mitochondrial
著者Shu, Z, Pontus, P, Peter, B, Lena, M, Pia, A.
登録日2020-06-14
公開日2021-05-19
実験手法SOLUTION NMR
主引用文献NMR structural analysis of the yeast cytochrome c oxidase subunit Cox13 and its interaction with ATP.
Bmc Biol., 19, 2021
8SNH
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BU of 8snh by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
分子名称: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2023-04-27
公開日2023-10-11
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
8SMR
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BU of 8smr by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
分子名称: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
著者Di Trani, J.M, Rubinstein, J.L.
登録日2023-04-26
公開日2023-10-11
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
3GZC
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BU of 3gzc by Molmil
Structure of human selenocysteine lyase
分子名称: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Selenocysteine lyase
著者Collins, R, Hogbom, M, Arrowsmith, C, Berglund, H, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Karlberg, T, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Schuler, H, Structural Genomics Consortium (SGC)
登録日2009-04-07
公開日2009-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.
Plos One, 7, 2012
6LUL
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BU of 6lul by Molmil
NMR structure and dynamics studies of yeast respiratory super-complex factor 2 in micelles
分子名称: Respiratory supercomplex factor 2, mitochondrial
著者Zhou, S, Pontus, P, Peter, B, Maler, L, Adelroth, P.
登録日2020-01-29
公開日2020-10-07
最終更新日2021-03-24
実験手法SOLUTION NMR
主引用文献NMR Structure and Dynamics Studies of Yeast Respiratory Supercomplex Factor 2.
Structure, 29, 2021
3GZD
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BU of 3gzd by Molmil
Human selenocysteine lyase, P1 crystal form
分子名称: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, NITRATE ION, Selenocysteine lyase
著者Karlberg, T, Hogbom, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Moche, M, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Schutz, P, Siponen, M.I, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Wisniewska, M, Schuler, H, Structural Genomics Consortium (SGC)
登録日2009-04-07
公開日2009-04-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.
Plos One, 7, 2012
1M56
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BU of 1m56 by Molmil
Structure of cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type)
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CALCIUM ION, COPPER (II) ION, ...
著者Svensson-Ek, M, Abramson, J, Larsson, G, Tornroth, S, Brezezinski, P, Iwata, S.
登録日2002-07-08
公開日2002-08-28
最終更新日2021-06-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.
J.Mol.Biol., 321, 2002
1M57
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BU of 1m57 by Molmil
Structure of cytochrome c oxidase from Rhodobacter sphaeroides (EQ(I-286) mutant))
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CALCIUM ION, COPPER (II) ION, ...
著者Svensson-Ek, M, Abramson, J, Larsson, G, Tornroth, S, Brezezinski, P, Iwata, S.
登録日2002-07-08
公開日2002-08-28
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.
J.Mol.Biol., 321, 2002

 

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