Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6Z9A
DownloadVisualize
BU of 6z9a by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: CHLORIDE ION, MAGNESIUM ION, SusC homolog, ...
Authors:van den Berg, B.
Deposit date:2020-06-03
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6Z8I
DownloadVisualize
BU of 6z8i by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: MAGNESIUM ION, PHOSPHATE ION, SusC homolog, ...
Authors:van den Berg, B.
Deposit date:2020-06-02
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZAZ
DownloadVisualize
BU of 6zaz by Molmil
Fructo-oligosaccharide transporter BT 1762-63
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:van den Berg, B.
Deposit date:2020-06-06
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
5MDP
DownloadVisualize
BU of 5mdp by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi (crystal form II)
Descriptor: Chitoporin
Authors:Zahn, M, van den Berg, B.
Deposit date:2016-11-13
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
5MDS
DownloadVisualize
BU of 5mds by Molmil
Crystal structure of outer membrane expressed Chitoporin VhChip from Vibrio harveyi in complex with chitotetraose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin
Authors:Zahn, M, van den Berg, B.
Deposit date:2016-11-13
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
6ZLU
DownloadVisualize
BU of 6zlu by Molmil
Closed-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZM1
DownloadVisualize
BU of 6zm1 by Molmil
Open-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
5MDR
DownloadVisualize
BU of 5mdr by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi in complex with chitohexaose
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin, ...
Authors:Zahn, M, van den Berg, B.
Deposit date:2016-11-13
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
6ZLT
DownloadVisualize
BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
5MDO
DownloadVisualize
BU of 5mdo by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi (crystal form I)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Chitoporin, SODIUM ION
Authors:Zahn, M, van den Berg, B.
Deposit date:2016-11-13
Release date:2017-12-20
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
5MDQ
DownloadVisualize
BU of 5mdq by Molmil
Crystal structure of outer membrane expressed Chitoporin VhChip from Vibrio harveyi
Descriptor: Chitoporin, SODIUM ION
Authors:Zahn, M, van den Berg, B.
Deposit date:2016-11-13
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
6EUI
DownloadVisualize
BU of 6eui by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactose
Descriptor: Beta-glucanase, CALCIUM ION, beta-D-galactopyranose
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUJ
DownloadVisualize
BU of 6euj by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
Descriptor: Beta-glucanase
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUF
DownloadVisualize
BU of 6euf by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
Descriptor: Beta-glucanase, alpha-L-arabinofuranose-(1-3)-[alpha-L-arabinofuranose-(1-4)][beta-D-glucopyranuronic acid-(1-6)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose, alpha-L-rhamnopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-6)-[alpha-L-arabinofuranose-(1-3)][alpha-L-arabinofuranose-(1-4)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUH
DownloadVisualize
BU of 6euh by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactodeoxynojirimycin
Descriptor: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, Beta-glucanase, CALCIUM ION
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUG
DownloadVisualize
BU of 6eug by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactoimidazole
Descriptor: Beta-glucanase, GLUCOIMIDAZOLE
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
5AF1
DownloadVisualize
BU of 5af1 by Molmil
Crystal structure of Candida albicans Mep2
Descriptor: MEP2
Authors:Rutherford, J.C, Chembath, A, van den Berg, B.
Deposit date:2015-01-14
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.639 Å)
Cite:Structural Basis for Mep2 Ammonium Transceptor Activation by Phosphorylation.
Nat.Commun., 7, 2016
5AH3
DownloadVisualize
BU of 5ah3 by Molmil
Crystal structure of the Mep2 mutant R452D,S453D from Candida albicans
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, MEP2
Authors:van den Berg, B, Chembath, A, Rutherford, J.
Deposit date:2015-02-04
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Mep2 Ammonium Transceptor Activation by Phosphorylation.
Nat.Commun., 7, 2016
6EX6
DownloadVisualize
BU of 6ex6 by Molmil
The GH127, Beta-arabinofuranosidase, BT3674
Descriptor: Six-hairpin glycosidase, ZINC ION
Authors:Munoz-Munoz, J, Gilbert, H.J.
Deposit date:2017-11-07
Release date:2018-11-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:The cellular location of endo-acting galactanases confers keystone or recipient status to arabinogalactan degrading organisms of the human gut microbiota
To Be Published
6Z34
DownloadVisualize
BU of 6z34 by Molmil
CymD monoaromatic hydrocarbon channel
Descriptor: CymD
Authors:van den Berg, B.
Deposit date:2020-05-19
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6Z38
DownloadVisualize
BU of 6z38 by Molmil
TodX deltaS2S3 mutant monoaromatic hydrocarbon channel
Descriptor: TodX
Authors:van den Berg, B.
Deposit date:2020-05-19
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6Z37
DownloadVisualize
BU of 6z37 by Molmil
TodX monoaromatic hydrocarbon channel deltaS2 mutant
Descriptor: TodX
Authors:van den Berg, B.
Deposit date:2020-05-19
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
2W27
DownloadVisualize
BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
Descriptor: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
Authors:Padavattan, S, AndERSON, W.F, Schirmer, T.
Deposit date:2008-10-24
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
2YB7
DownloadVisualize
BU of 2yb7 by Molmil
CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose
Descriptor: CALCIUM ION, CARBOHYDRATE BINDING FAMILY 6, GLYCEROL, ...
Authors:Montanier, C.Y, Correia, M.A.S, Flint, J.E, Zhu, Y, McKee, L.S, Prates, J.A.M, Polizzi, S.J, Coutinho, P.M, Henrissat, B, Fontes, C.M.G.A, Gilbert, H.J.
Deposit date:2011-03-02
Release date:2011-08-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Novel, Noncatalytic Carbohydrate-Binding Module Displays Specificity for Galactose-Containing Polysaccharides Through Calcium-Mediated Oligomerization.
J.Biol.Chem., 286, 2011
4AFD
DownloadVisualize
BU of 4afd by Molmil
Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens with a partially bound cellotetraose moeity.
Descriptor: ENDOGLUCANASE CEL5A, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Luis, A.S, Venditto, I, Prates, J.A.M, Ferreira, L.M.A, Gilbert, H.J, Fontes, C.M.G.A, Najmudin, S.
Deposit date:2012-01-18
Release date:2012-12-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Understanding How Noncatalytic Carbohydrate Binding Modules Can Display Specificity for Xyloglucan.
J.Biol.Chem., 288, 2013

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon