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3KDO
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BU of 3kdo by Molmil
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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BU of 3kdn by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
4GA6
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BU of 4ga6 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates
分子名称: ADENOSINE MONOPHOSPHATE, Putative thymidine phosphorylase, SULFATE ION
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA4
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BU of 4ga4 by Molmil
Crystal structure of AMP phosphorylase N-terminal deletion mutant
分子名称: PHOSPHATE ION, Putative thymidine phosphorylase
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4G9I
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BU of 4g9i by Molmil
Crystal structure of T.kodakarensis HypF
分子名称: Hydrogenase maturation protein HypF, ZINC ION
著者Tominaga, T, Watanabe, S, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-24
公開日2012-10-24
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.
Acta Crystallogr.,Sect.F, 68, 2012
4GA5
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BU of 4ga5 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in the apo-form
分子名称: Putative thymidine phosphorylase
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
1GEH
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BU of 1geh by Molmil
CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE)
分子名称: RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, SULFATE ION
著者Kitano, K, Maeda, N, Fukui, T, Atomi, H, Imanaka, T, Miki, K.
登録日2000-11-13
公開日2001-12-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of a Novel-Type Archaeal Rubisco with Pentagonal Symmetry
Structure, 9, 2001
8JVG
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BU of 8jvg by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVC
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BU of 8jvc by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVF
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BU of 8jvf by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
3WDK
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BU of 3wdk by Molmil
Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with reaction intermediate
分子名称: 4-phosphopantoate--beta-alanine ligase, 5'-O-[(S)-hydroxy{[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]oxy}phosphoryl]adenosine, CITRATE ANION
著者Kishimoto, A, Kita, A, Ishibashi, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
登録日2013-06-19
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDM
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BU of 3wdm by Molmil
Crystal structure of 4-phosphopantoate-beta-alanine ligase from Thermococcus kodakarensis
分子名称: 4-phosphopantoate--beta-alanine ligase, ADENOSINE
著者Kishimoto, A, Kita, A, Ishibashi, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
登録日2013-06-19
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDL
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BU of 3wdl by Molmil
Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with ATP
分子名称: 4-phosphopantoate--beta-alanine ligase, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Kishimoto, A, Kita, A, Ishibashi, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
登録日2013-06-19
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3VM6
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BU of 3vm6 by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate
分子名称: 1,5-di-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, A, Fujihashi, M, Aono, R, Sato, T, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2011-12-08
公開日2012-04-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
6JBC
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BU of 6jbc by Molmil
Phosphotransferase related to CoA biosynthesis pathway
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
著者Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
登録日2019-01-25
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
6JBD
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BU of 6jbd by Molmil
Phosphotransferase-ATP complex related to CoA biosynthesis pathway
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
著者Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
登録日2019-01-25
公開日2020-01-29
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
2Z1D
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BU of 2z1d by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
分子名称: Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A11
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BU of 3a11 by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Translation initiation factor eIF-2B, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3A12
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Crystal structure of Type III Rubisco complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A13
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Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Structure-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
3A44
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Crystal structure of HypA in the dimeric form
分子名称: Hydrogenase nickel incorporation protein hypA, ZINC ION
著者Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
登録日2009-06-30
公開日2009-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A9C
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BU of 3a9c by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, RIBULOSE-1,5-DIPHOSPHATE, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-22
公開日2010-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
2Z1E
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Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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Crystal structure of HypC from Thermococcus kodakaraensis KOD1
分子名称: GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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Crystal structure of HypE from Thermococcus kodakaraensis (inward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007

 

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