5ZCB
| Crystal structure of Alpha-glucosidase | Descriptor: | Alpha-glucosidase, CALCIUM ION | Authors: | Kato, K, Saburi, W, Yao, M. | Deposit date: | 2018-02-16 | Release date: | 2018-12-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Function and structure of GH13_31 alpha-glucosidase with high alpha-(1→4)-glucosidic linkage specificity and transglucosylation activity. FEBS Lett., 592, 2018
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5XFM
| Crystal structure of beta-arabinopyranosidase | Descriptor: | Alpha-glucosidase, CALCIUM ION | Authors: | Kato, K, Okuyama, M, Yao, M. | Deposit date: | 2017-04-10 | Release date: | 2018-02-28 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A novel glycoside hydrolase family 97 enzyme: Bifunctional beta-l-arabinopyranosidase/ alpha-galactosidase from Bacteroides thetaiotaomicron. Biochimie, 142, 2017
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2CVI
| Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 75aa long hypothetical regulatory protein AsnC, POTASSIUM ION | Authors: | Kitago, Y, Sakai, N, Matsumoto, D, Yao, M, Aizawa, T, Demura, M, Kawano, K, Nitta, K, Watanabe, N, Tanaka, I. | Deposit date: | 2005-06-03 | Release date: | 2006-06-03 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii TO BE PUBLISHED
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2D74
| Crystal structure of translation initiation factor aIF2betagamma heterodimer | Descriptor: | Translation initiation factor 2 beta subunit, Translation initiation factor 2 gamma subunit, ZINC ION | Authors: | Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I. | Deposit date: | 2005-11-16 | Release date: | 2006-07-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region. Proc.Natl.Acad.Sci.USA, 103, 2006
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2DCU
| Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP | Descriptor: | GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 beta subunit, ... | Authors: | Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I. | Deposit date: | 2006-01-16 | Release date: | 2006-07-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.4 Å) | Cite: | Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region. Proc.Natl.Acad.Sci.USA, 103, 2006
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2DGJ
| Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus | Descriptor: | ACETIC ACID, GLYCEROL, SULFATE ION, ... | Authors: | Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-14 | Release date: | 2007-03-20 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus Structure, 16, 2008
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4I86
| Crystal structure of PilZ domain of CeSA from cellulose synthesizing bacterium | Descriptor: | Cellulose synthase 1 | Authors: | Fujiwara, T, Komoda, K, Sakurai, N, Tanaka, I, Yao, M. | Deposit date: | 2012-12-03 | Release date: | 2013-04-03 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.098 Å) | Cite: | The c-di-GMP recognition mechanism of the PilZ domain of bacterial cellulose synthase subunit A Biochem.Biophys.Res.Commun., 431, 2013
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2DI3
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5X3J
| Kfla1895 D451A mutant in complex with cyclobis-(1->6)-alpha-nigerosyl | Descriptor: | Cyclic alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, GLYCEROL, Glycoside hydrolase family 31, ... | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2017-02-06 | Release date: | 2018-02-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Glycoside hydrolase mutant in complex with substrate To Be Published
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5X3I
| Kfla1895 D451A mutant | Descriptor: | GLYCEROL, Glycoside hydrolase family 31, SULFATE ION | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2017-02-06 | Release date: | 2018-02-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Glycoside hydrolase mutant To Be Published
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5X6C
| Crystal structure of SepRS-SepCysE from Methanocaldococcus jannaschii | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, O-phosphoserine--tRNA(Cys) ligase, SULFATE ION, ... | Authors: | Chen, M, Kato, K, Yao, M. | Deposit date: | 2017-02-21 | Release date: | 2017-12-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.101 Å) | Cite: | Structural basis for tRNA-dependent cysteine biosynthesis Nat Commun, 8, 2017
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5X6B
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5X3K
| Kfla1895 D451A mutant in complex with isomaltose | Descriptor: | GLYCEROL, Glycoside hydrolase family 31, SULFATE ION, ... | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2017-02-06 | Release date: | 2018-02-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Glycoside hydrolase mutant in complex with product To Be Published
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5H7L
| Complex of Elongation factor 2-50S ribosomal protein L12 | Descriptor: | 50S ribosomal protein L12, Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | Authors: | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | Deposit date: | 2016-11-18 | Release date: | 2018-02-21 | Last modified: | 2018-05-02 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
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5H7J
| Crystal structure of Elongation factor 2 | Descriptor: | Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | Authors: | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | Deposit date: | 2016-11-18 | Release date: | 2018-02-21 | Last modified: | 2018-05-02 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
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5H7K
| Crystal structure of Elongation factor 2 GDP-form | Descriptor: | Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE | Authors: | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | Deposit date: | 2016-11-18 | Release date: | 2018-02-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.599 Å) | Cite: | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
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4YD9
| Crystal structure of squid hemocyanin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CU2-O2 CLUSTER, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Matsuno, A, Gai, Z, Kato, K, Tanaka, Y, Yao, M. | Deposit date: | 2015-02-21 | Release date: | 2015-10-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution Structure, 23, 2015
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1UD9
| Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii | Descriptor: | DNA polymerase sliding clamp A, ZINC ION | Authors: | Tanabe, E, Yasutake, Y, Tanaka, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I. | Deposit date: | 2003-04-28 | Release date: | 2004-06-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii To be published
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1UC2
| Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii | Descriptor: | SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, hypothetical protein PH1602 | Authors: | Okada, C, Maegawa, Y, Yao, M, Tanaka, I. | Deposit date: | 2003-04-08 | Release date: | 2004-05-04 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold Proteins, 63, 2006
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1UDD
| TenA homologue protein from P.horikoshii OT3 | Descriptor: | transcriptional regulator | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2003-04-28 | Release date: | 2004-06-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii. Acta Crystallogr.,Sect.D, 60, 2004
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1UB9
| Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3 | Descriptor: | Hypothetical protein PH1061 | Authors: | Okada, U, Sakai, N, Tajika, Y, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2003-04-03 | Release date: | 2004-05-04 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3. Proteins, 63, 2006
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1VAJ
| Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii | Descriptor: | Hypothetical protein PH0010 | Authors: | Tajika, Y, Sakai, N, Tamura, T, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2004-02-17 | Release date: | 2005-01-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Crystal structure of PH0010 from Pyrococcus horikoshii, which is highly homologous to human AMMECR 1C-terminal region Proteins, 58, 2005
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1UKU
| Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+ | Descriptor: | COPPER (II) ION, periplasmic divalent cation tolerance protein CutA | Authors: | Tanaka, Y, Yasutake, Y, Yao, M, Sakai, N, Tanaka, I, Tsumoto, K, Kumagai, I. | Deposit date: | 2003-09-01 | Release date: | 2004-01-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA. Febs Lett., 556, 2004
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1ULY
| Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3 | Descriptor: | hypothetical protein PH1932 | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2003-09-17 | Release date: | 2004-10-19 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3 Proteins, 70, 2008
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1V30
| Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hypothetical UPF0131 protein PH0828 | Authors: | Tajika, Y, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2003-10-21 | Release date: | 2004-11-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Crystal structure of hypothetical protein PH0828 from Pyrococcus horikoshii. Proteins, 57, 2004
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