Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2D73
DownloadVisualize
BU of 2d73 by Molmil
Crystal Structure Analysis of SusB
分子名称: CALCIUM ION, alpha-glucosidase SusB
著者Kitamura, M, Yao, M.
登録日2005-11-15
公開日2007-02-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
2DDX
DownloadVisualize
BU of 2ddx by Molmil
Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
分子名称: GLYCEROL, MAGNESIUM ION, beta-1,3-xylanase
著者Sakaguchi, K.
登録日2006-02-06
公開日2007-02-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
To be Published
2DXM
DownloadVisualize
BU of 2dxm by Molmil
Neutron Structure Analysis of Deoxy Human Hemoglobin
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
著者Morimoto, Y.
登録日2006-08-28
公開日2007-12-04
最終更新日2024-04-03
実験手法NEUTRON DIFFRACTION (2.1 Å)
主引用文献Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography.
J.Am.Chem.Soc., 129, 2007
487D
DownloadVisualize
BU of 487d by Molmil
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
分子名称: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L14, ...
著者Brimacombe, R, Mueller, F.
登録日2000-02-23
公開日2000-04-10
最終更新日2023-06-07
実験手法ELECTRON MICROSCOPY (7.5 Å)
主引用文献The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
J.Mol.Biol., 298, 2000
3A5P
DownloadVisualize
BU of 3a5p by Molmil
Crystal structure of hemagglutinin
分子名称: Haemagglutinin I
著者Watanabe, N, Sakai, N, Nakamura, T, Nabeshima, Y, Kouno, T, Mizuguchi, M, Kawano, K.
登録日2009-08-10
公開日2010-08-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献The Structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of legume lectin fold
J.Mol.Biol., 405, 2011
3AJ9
DownloadVisualize
BU of 3aj9 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from D2O Solution Using PEG 8000
分子名称: CALCIUM ION, GLYCEROL, Proteinase K
著者Chatake, T, Ishikawa, T, Morimoto, Y.
登録日2010-05-27
公開日2011-06-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
3AJ8
DownloadVisualize
BU of 3aj8 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from H2O Solution Using PEG 8000
分子名称: CALCIUM ION, GLYCEROL, Proteinase K
著者Chatake, T, Ishikawa, T, Morimoto, Y.
登録日2010-05-27
公開日2011-06-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
1JFC
DownloadVisualize
BU of 1jfc by Molmil
X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution
分子名称: CARBON MONOXIDE, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Shimizu, H, Adachi, S, Park, S.Y, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-06-20
公開日2001-12-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.
Acta Crystallogr.,Sect.D, 58, 2002
3VPL
DownloadVisualize
BU of 3vpl by Molmil
Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase
分子名称: 3,4-dinitrophenol, Beta-1,3-xylanase XYL4, beta-D-xylopyranose-(1-3)-beta-D-xylopyranose-(1-3)-2-deoxy-2-fluoro-beta-D-xylopyranose, ...
著者Watanabe, N, Sakaguchi, K.
登録日2012-03-05
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 beta-1,3-xylanase at 1.2 A resolution
To be Published
3W79
DownloadVisualize
BU of 3w79 by Molmil
Crystal Structure of azoreductase AzrC in complex with sulfone-modified azo dye Orange I
分子名称: 4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase
著者Ogata, D, Yu, J, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014
3WKR
DownloadVisualize
BU of 3wkr by Molmil
Crystal structure of the SepCysS-SepCysE complex from Methanocaldococcus jannaschii
分子名称: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481
著者Nakazawa, Y, Asano, N, Nakamura, A, Yao, M.
登録日2013-10-30
公開日2014-07-16
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.
Proc.Natl.Acad.Sci.USA, 111, 2014
3W7A
DownloadVisualize
BU of 3w7a by Molmil
Crystal Structure of azoreductase AzrC fin complex with sulfone-modified azo dye Acid Red 88
分子名称: 4-[(E)-(2-hydroxynaphthalen-1-yl)diazenyl]naphthalene-1-sulfonic acid, CALCIUM ION, FLAVIN MONONUCLEOTIDE, ...
著者Yu, J, Ogata, D, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014
3W78
DownloadVisualize
BU of 3w78 by Molmil
Crystal Structure of azoreductase AzrC in complex with NAD(P)-inhibitor Cibacron Blue
分子名称: CIBACRON BLUE, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase
著者Yu, J, Ogata, D, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014
3WKS
DownloadVisualize
BU of 3wks by Molmil
Crystal structure of the SepCysS-SepCysE N-terminal domain complex from
分子名称: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481
著者Nakazawa, Y, Asano, N, Nakamura, A, Yao, M.
登録日2013-10-30
公開日2014-07-30
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (3.029 Å)
主引用文献Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.
Proc.Natl.Acad.Sci.USA, 111, 2014
3W77
DownloadVisualize
BU of 3w77 by Molmil
Crystal Structure of azoreductase AzrA
分子名称: FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase
著者Ogata, D, Yu, J, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014
3P20
DownloadVisualize
BU of 3p20 by Molmil
Crystal structure of vanadate bound subunit A of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Manimekalai, M.S.S, Kumar, A, Jeyakanthan, J, Gruber, G.
登録日2010-10-01
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
3QG1
DownloadVisualize
BU of 3qg1 by Molmil
Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, V-type ATP synthase alpha chain
著者Ragunathan, P, Manimekalai, M.S.S, Kumar, A, Jeyakanthan, J, Gruber, G.
登録日2011-01-24
公開日2011-10-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance.
J.Mol.Biol., 413, 2011
3QIA
DownloadVisualize
BU of 3qia by Molmil
Crystal structure of P-loop G237A mutant of subunit A of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Ragunathan, P, Manimekalai, M.S.S, Jeyakanthan, J, Gruber, G.
登録日2011-01-26
公開日2011-10-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance.
J.Mol.Biol., 413, 2011
3QJY
DownloadVisualize
BU of 3qjy by Molmil
Crystal structure of P-loop G234A mutant of subunit A of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Ragunathan, P, Manimekalai, M.S.S, Jeyakanthan, J, Gruber, G.
登録日2011-01-31
公開日2011-10-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance.
J.Mol.Biol., 413, 2011
3SDZ
DownloadVisualize
BU of 3sdz by Molmil
Structural characterization of the subunit A mutant F427W of the A-ATP synthase from Pyrococcus horikoshii
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Tadwal, V.S, Manimekalai, M.S.S, Balakrishna, A.M, Gruber, G.
登録日2011-06-09
公開日2012-01-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Engineered tryptophan in the adenine-binding pocket of catalytic subunit A of A-ATP synthase demonstrates the importance of aromatic residues in adenine binding, forming a tool for steady-state and time-resolved fluorescence spectroscopy.
Acta Crystallogr.,Sect.F, 67, 2011
3SE0
DownloadVisualize
BU of 3se0 by Molmil
Structural characterization of the subunit A mutant F508W of the A-ATP synthase from Pyrococcus horikoshii
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Tadwal, V.S, Manimekalai, M.S.S, Balakrishna, A.M, Gruber, G.
登録日2011-06-09
公開日2012-01-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Engineered tryptophan in the adenine-binding pocket of catalytic subunit A of A-ATP synthase demonstrates the importance of aromatic residues in adenine binding, forming a tool for steady-state and time-resolved fluorescence spectroscopy.
Acta Crystallogr.,Sect.F, 67, 2011
1EHE
DownloadVisualize
BU of 1ehe by Molmil
CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S
分子名称: CYTOCHROME P450NOR, PROTOPORPHYRIN IX CONTAINING FE
著者Shimizu, H, Park, S.
登録日2000-02-21
公開日2000-08-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of cytochrome P450nor and its mutants (Ser286-->Val, Thr) in the ferric resting state at cryogenic temperature: a comparative analysis with monooxygenase cytochrome P450s.
J.Inorg.Biochem., 81, 2000
1F24
DownloadVisualize
BU of 1f24 by Molmil
CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR
分子名称: GLYCEROL, NITRIC OXIDE, NITRIC OXIDE REDUCTASE, ...
著者Shimizu, H, Park, S.-Y.
登録日2000-05-23
公開日2000-11-23
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000
1F25
DownloadVisualize
BU of 1f25 by Molmil
CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR
分子名称: GLYCEROL, NITRIC OXIDE, NITRIC OXIDE REDUCTASE, ...
著者Shimizu, H, Park, S.-Y.
登録日2000-05-23
公開日2000-11-23
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000
1F26
DownloadVisualize
BU of 1f26 by Molmil
CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR
分子名称: GLYCEROL, NITRIC OXIDE, NITRIC OXIDE REDUCTASE, ...
著者Shimizu, H, Park, S.-Y.
登録日2000-05-23
公開日2000-11-23
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon