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7BVR
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BU of 7bvr by Molmil
DgpB-DgpC complex apo
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
著者Mori, T, He, H, Abe, I.
登録日2020-04-11
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7BVS
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BU of 7bvs by Molmil
DfgA-DfgB complex apo
分子名称: DfgB, GLYCEROL, MANGANESE (II) ION, ...
著者Mori, T, He, H, Abe, I.
登録日2020-04-11
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
8IL8
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BU of 8il8 by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis
分子名称: Aldolase, FE (II) ION
著者Tsujino, S, Yamada, Y, Fujiwara, T.
登録日2023-03-03
公開日2024-03-06
実験手法X-RAY DIFFRACTION (1.769 Å)
主引用文献Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
8IQA
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BU of 8iqa by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis deleted N-terminal 18 residues
分子名称: Aldolase, NICKEL (II) ION
著者Tsujino, S, Yamada, Y, Fujiwara, T.
登録日2023-03-16
公開日2024-03-20
実験手法X-RAY DIFFRACTION (1.551 Å)
主引用文献Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
8IX6
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BU of 8ix6 by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Bradyrhizobium sp. WSM3983
分子名称: Aldolase, NICKEL (II) ION, SULFATE ION
著者Tsujino, S, Yamada, Y, Fujiwara, T.
登録日2023-03-31
公開日2024-04-03
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
4X86
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BU of 4x86 by Molmil
Crystal structure of BAG6-Ubl4a complex
分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Large proline-rich protein BAG6, SULFATE ION, ...
著者Kuwabara, N, Kato, R.
登録日2014-12-10
公開日2015-02-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a BAG6 (Bcl-2-associated Athanogene 6)-Ubl4a (Ubiquitin-like Protein 4a) Complex Reveals a Novel Binding Interface That Functions in Tail-anchored Protein Biogenesis
J.Biol.Chem., 290, 2015
6KAM
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BU of 6kam by Molmil
Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
5YBQ
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BU of 5ybq by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A2
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBM
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BU of 5ybm by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA
分子名称: PrhA
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.115 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBR
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BU of 5ybr by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A3
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.261 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBO
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BU of 5ybo by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with preaustinoid A1
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBL
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BU of 5ybl by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AusE
分子名称: 2-OXOGLUTARIC ACID, MANGANESE (II) ION, Multifunctional dioxygenase ausE
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.108 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBT
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BU of 5ybt by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S/M241V in complex with berkeleyone A
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBS
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BU of 5ybs by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with berkeleyone A
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBN
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BU of 5ybn by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with (alpha)ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBP
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BU of 5ybp by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A1
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
著者Nakashima, Y, Senda, M.
登録日2017-09-05
公開日2018-01-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.312 Å)
主引用文献Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
2Z2U
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BU of 2z2u by Molmil
Crystal structure of archaeal TYW1
分子名称: UPF0026 protein MJ0257
著者Suzuki, Y, Ishitani, R, Nureki, O.
登録日2007-05-28
公開日2007-10-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA
J.Mol.Biol., 372, 2007
5GZ9
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BU of 5gz9 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ...
著者Nagae, M, Yamaguchi, Y.
登録日2016-09-27
公開日2017-03-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GZ8
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BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
分子名称: Protein O-mannose kinase
著者Nagae, M, Yamaguchi, Y.
登録日2016-09-27
公開日2017-03-29
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
7V62
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BU of 7v62 by Molmil
Crystal structure of human OSBP ORD in complex with cholesterol
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHOLESTEROL, CITRIC ACID, ...
著者Kobayashi, J, Kato, R.
登録日2021-08-19
公開日2022-06-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Ligand Recognition by the Lipid Transfer Domain of Human OSBP Is Important for Enterovirus Replication.
Acs Infect Dis., 8, 2022
7VTA
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BU of 7vta by Molmil
Talaromyces verruculosus talaropentaene synthase apo
分子名称: TvTS cyclase domain
著者Hui, T, Mori, T, Abe, I.
登録日2021-10-28
公開日2022-06-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of non-squalene triterpenes.
Nature, 606, 2022
7VTB
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BU of 7vtb by Molmil
Partially closed conformation of talaropentaene synthase cyclase domain
分子名称: NICKEL (II) ION, TvTS cyclase domain
著者Hui, T, Mori, T, Abe, I.
登録日2021-10-28
公開日2022-06-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of non-squalene triterpenes.
Nature, 606, 2022
7WIJ
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BU of 7wij by Molmil
Cryo-EM structure of prenyltransferase domain of Macrophoma phaseolina macrophomene synthase
分子名称: Geranylgeranyl diphosphate synthase
著者Mori, T, Adachi, N, Abe, I.
登録日2022-01-03
公開日2022-06-22
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Discovery of non-squalene triterpenes.
Nature, 606, 2022
5GU5
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BU of 5gu5 by Molmil
Crystal structure of p24gamma2 GOLD domain determined by sulfur-SAD
分子名称: BROMIDE ION, Transmembrane emp24 domain-containing protein 5
著者Nagae, M, Yamaguchi, Y.
登録日2016-08-25
公開日2017-01-25
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic analysis of murine p24 gamma 2 Golgi dynamics domain
Proteins, 85, 2017
6M35
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BU of 6m35 by Molmil
Crystal structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
分子名称: FE (III) ION, GLYCEROL, SULFATE ION, ...
著者Sato, Y, Yabuki, T, Arakawa, T, Yamada, C, Fushinobu, S, Wakagi, T.
登録日2020-03-02
公開日2020-07-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase fromSulfurisphaera tokodaii.
J Struct Biol X, 4, 2020

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