2ZO5
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with azide | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AZIDE ION, ... | Authors: | Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O. | Deposit date: | 2008-05-05 | Release date: | 2009-05-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens J.Mol.Biol., 389, 2009
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2OT4
| Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio nitratireducens | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ... | Authors: | Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O. | Deposit date: | 2007-02-07 | Release date: | 2008-04-08 | Last modified: | 2017-10-18 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens. J.Mol.Biol., 389, 2009
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6Q8E
| Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum in PMP-form | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Branched-chain-amino-acid aminotransferase, CHLORIDE ION | Authors: | Boyko, K.M, Bezsudnova, E.Y, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Popov, V.O. | Deposit date: | 2018-12-14 | Release date: | 2019-01-02 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum. Biochimie, 158, 2018
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3D1I
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O. | Deposit date: | 2008-05-06 | Release date: | 2009-05-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens J.Mol.Biol., 389, 2009
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5OEX
| Complex with iodine ion for thiocyanate dehydrogenase from Thioalkalivibrio paradoxus | Descriptor: | 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, COPPER (II) ION, ... | Authors: | Polyakov, K.M, Tsallagov, S.I, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2017-07-10 | Release date: | 2018-08-01 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Discovery and characterization of a novel copper containing enzyme - THIOCYANATE DEHYDROGENASE. To Be Published
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6I3Q
| The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with acetate ions. | Descriptor: | ACETATE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Polyakov, K.M, Popov, A.N, Tikhkonova, T.V, Popov, V.O, Trofimov, A.A. | Deposit date: | 2018-11-07 | Release date: | 2018-11-28 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proc.Natl.Acad.Sci.USA, 117, 2020
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3GM6
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with phosphate | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2009-03-13 | Release date: | 2009-08-04 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of octaheme cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens in a complex with phosphate Crystallography Reports, 55, 2010
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3JTM
| Structure of recombinant formate dehydrogenase from Arabidopsis thaliana | Descriptor: | AZIDE ION, Formate dehydrogenase, mitochondrial, ... | Authors: | Timofeev, V.I, Shabalin, I.G, Serov, A.E, Polyakov, K.M, Popov, V.O, Tishkov, V.I, Kuranova, I.P, Samigina, V.R. | Deposit date: | 2009-09-13 | Release date: | 2010-09-15 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Structure of recombinant formate dehydrogenase from Arabidopsis thaliana to be published
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8BPN
| The structure of thiocyanate dehydrogenase mutant form with Phe 436 replaced by Gln from Thioalkalivibrio paradoxus | Descriptor: | COPPER (II) ION, DI(HYDROXYETHYL)ETHER, Twin-arginine translocation signal domain-containing protein | Authors: | Varfolomeeva, L.A, Solovieva, A.Y, Shipkov, N.S, Kulikova, O.G, Dergousova, N.I, Rakitina, T.V, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2023-01-09 | Release date: | 2023-01-18 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Probing the Role of a Conserved Phenylalanine in the Active Site of Thiocyanate Dehydrogenase Crystals, 12, 2022
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8ONN
| Crystal structure of D-amino acid aminotransferase from Aminobacterium colombiense point mutant E113A complexed with 3-aminooxypropionic acid | Descriptor: | 3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid, Aminotransferase class IV | Authors: | Matyuta, I.O, Boyko, K.M, Minyaev, M.E, Shilova, S.A, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2023-04-03 | Release date: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | In search for structural targets for engineering d-amino acid transaminase: modulation of pH optimum and substrate specificity. Biochem.J., 480, 2023
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3FO3
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex) | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O. | Deposit date: | 2008-12-27 | Release date: | 2009-12-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide Acta Crystallogr.,Sect.D, 66, 2010
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2NAD
| HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE | Descriptor: | AZIDE ION, NAD-DEPENDENT FORMATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Lamzin, V.S, Dauter, Z, Popov, V.O, Harutyunyan, E.H, Wilson, K.S. | Deposit date: | 1994-07-06 | Release date: | 1995-01-26 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | High resolution structures of holo and apo formate dehydrogenase. J.Mol.Biol., 236, 1994
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2NAC
| HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE | Descriptor: | NAD-DEPENDENT FORMATE DEHYDROGENASE, SULFATE ION | Authors: | Lamzin, V.S, Dauter, Z, Popov, V.O, Harutyunyan, E.H, Wilson, K.S. | Deposit date: | 1994-07-06 | Release date: | 1995-01-26 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | High resolution structures of holo and apo formate dehydrogenase. J.Mol.Biol., 236, 1994
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3MMO
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O. | Deposit date: | 2010-04-20 | Release date: | 2010-09-29 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide. Acta Crystallogr.,Sect.D, 66, 2010
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4EQ5
| DNA ligase from the archaeon Thermococcus sibiricus | Descriptor: | ADENOSINE MONOPHOSPHATE, DNA ligase | Authors: | Petrova, T, Bezsudnova, E.Y, Dorokhov, B.D, Slutskaya, E.S, Polyakov, K.M, Dorovatovskiy, P.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O. | Deposit date: | 2012-04-18 | Release date: | 2012-05-09 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus. Acta Crystallogr.,Sect.F, 68, 2012
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6THQ
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis with norvaline | Descriptor: | 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID, Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2019-11-21 | Release date: | 2020-09-30 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline Crystallography Reports, 2020
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6UWE
| Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper | Descriptor: | COPPER (II) ION, UNKNOWN ATOM OR ION, thiocyanate dehydrogenase | Authors: | Shabalin, I.G, Osipov, E, Tikhonova, T.V, Rakitina, T.V, Boyko, K.M, Popov, V.O. | Deposit date: | 2019-11-05 | Release date: | 2019-11-27 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proc.Natl.Acad.Sci.USA, 117, 2020
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4NPO
| Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup | Descriptor: | ACETATE ION, ACETYL GROUP, GLYCEROL, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Shabalin, I.G, Shumilin, I.A, Dorovatovsky, P.V, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-22 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Crystal structure of protein with unknown function at P61 spacegroup To be Published
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4NS4
| Crystal structure of cold-active estarase from Psychrobacter cryohalolentis K5T | Descriptor: | Alpha/beta hydrolase fold protein | Authors: | Boyko, K.M, Petrovskaya, L.E, Gorbacheva, M.A, Korgenevsky, D.A, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-28 | Release date: | 2015-01-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme To be Published
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4NMJ
| Thermostable aldehyde dehydrogenase from Pyrobaculum sp. complexed with NADP+ at 2 A resolution | Descriptor: | Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Petrova, T, Boyko, K.M, Bezsudnova, E.Y, Mardanov, A.V, Gumerov, V.M, Ravin, N.V, Popov, V.O. | Deposit date: | 2013-11-15 | Release date: | 2014-11-19 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.002 Å) | Cite: | Thermostable aldehyde dehydrogenase from Pyrobaculum sp. complexed with NADP+ at 2 A resolution To be Published
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4Q17
| Free form of TvNiR, middle dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-03 | Release date: | 2014-09-10 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes To be published
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4Q0T
| Free form of TvNiR, low dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-02 | Release date: | 2014-09-10 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes TO BE PUBLISHED
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4Q5B
| TvNiR in complex with sulfite, high dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-16 | Release date: | 2014-09-10 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes To be Published
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4Q5C
| TvNiR in complex with sulfite, middle dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-16 | Release date: | 2014-09-03 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes To be Published
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4Q1O
| Free form of TvNiR, high dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-04 | Release date: | 2014-09-10 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes To be Published
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