3VOR
| Crystal Structure Analysis of the CofA | 分子名称: | CFA/III pilin | 著者 | Fukakusa, S, Kawahara, K, Nakamura, S, Iwasita, T, Baba, S, Nishimura, M, Kobayashi, Y, Honda, T, Iida, T, Taniguchi, T, Ohkubo, T. | 登録日 | 2012-02-06 | 公開日 | 2012-09-26 | 最終更新日 | 2013-07-31 | 実験手法 | X-RAY DIFFRACTION (0.9 Å) | 主引用文献 | Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing Acta Crystallogr.,Sect.D, 68, 2012
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7W65
| Crystal structure of minor pilin TcpB from Vibrio cholerae complexed with secreted protein TcpF | 分子名称: | Toxin coregulated pilus biosynthesis protein F, Toxin-coregulated pilus biosynthesis protein B | 著者 | Oki, H, Kawahara, K, Iimori, M, Imoto, Y, Maruno, T, Uchiyama, S, Muroga, Y, Yoshida, A, Yoshida, T, Ohkubo, T, Matsuda, S, Iida, T, Nakamura, S. | 登録日 | 2021-12-01 | 公開日 | 2022-11-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (4.05 Å) | 主引用文献 | Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv, 8, 2022
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7W63
| Crystal structure of minor pilin TcpB from Vibrio cholerae | 分子名称: | SULFATE ION, Toxin-coregulated pilus biosynthesis protein B | 著者 | Oki, H, Kawahara, K, Iimori, M, Imoto, Y, Maruno, T, Uchiyama, S, Muroga, Y, Yoshida, A, Yoshida, T, Ohkubo, T, Matsuda, S, Iida, T, Nakamura, S. | 登録日 | 2021-12-01 | 公開日 | 2022-11-09 | 最終更新日 | 2022-11-16 | 実験手法 | X-RAY DIFFRACTION (2.32 Å) | 主引用文献 | Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv, 8, 2022
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7W64
| Crystal structure of minor pilin TcpB from Vibrio cholerae complexed with N-terminal peptide fragment of TcpF | 分子名称: | CALCIUM ION, CHLORIDE ION, PENTAETHYLENE GLYCOL, ... | 著者 | Oki, H, Kawahara, K, Iimori, M, Imoto, Y, Maruno, T, Uchiyama, S, Muroga, Y, Yoshida, A, Yoshida, T, Ohkubo, T, Matsuda, S, Iida, T, Nakamura, S. | 登録日 | 2021-12-01 | 公開日 | 2022-11-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv, 8, 2022
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1IWC
| TFE-induded structure of the N-terminal domain of pig gastric H/K-ATPase | 分子名称: | gastric H/K-ATPase | 著者 | Fujitani, N, Kanagawa, M, Aizawa, T, Ohkubo, T, Kaya, S, Demura, M, Kawano, K, Taniguchi, K, Nitta, K. | 登録日 | 2002-05-02 | 公開日 | 2002-11-27 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure determination and conformational change induced by tyrosine phosphorylation of the N-terminal domain of the alpha-chain of pig gastric H+/K+-ATPase Biochem.Biophys.Res.Commun., 300, 2003
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1ISE
| Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly | 分子名称: | Ribosome Recycling Factor | 著者 | Nakano, H, Yoshida, T, Oka, S, Uchiyama, S, Nishina, K, Ohkubo, T, Kato, H, Yamagata, Y, Kobayashi, Y. | 登録日 | 2001-11-30 | 公開日 | 2003-10-07 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly To be Published
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1IWF
| Solution structure of the N-terminal domain of pig gastric H/K-ATPase | 分子名称: | gastric H/K-ATPase | 著者 | Fujitani, N, Kanagawa, M, Aizawa, T, Ohkubo, T, Kaya, S, Demura, M, Kawano, K, Taniguchi, K, Nitta, K. | 登録日 | 2002-05-06 | 公開日 | 2002-11-27 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure determination and conformational change induced by tyrosine phosphorylation of the N-terminal domain of the alpha-chain of pig gastric H+/K+-ATPase Biochem.Biophys.Res.Commun., 300, 2003
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3WJ4
| Crystal structure of PPARgamma ligand binding domain in complex with tributyltin | 分子名称: | Peroxisome proliferator-activated receptor gamma, tributylstannanyl | 著者 | Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T. | 登録日 | 2013-10-04 | 公開日 | 2014-10-15 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds To be Published
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3WJ5
| Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin | 分子名称: | Peroxisome proliferator-activated receptor gamma, triphenylstannanyl | 著者 | Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T. | 登録日 | 2013-10-04 | 公開日 | 2014-10-15 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.89 Å) | 主引用文献 | Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds To be Published
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1VA2
| Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2) | 分子名称: | Transcription factor Sp1, ZINC ION | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | 登録日 | 2004-02-07 | 公開日 | 2005-02-08 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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1V6R
| Solution Structure of Endothelin-1 with its C-terminal Folding | 分子名称: | Endothelin-1 | 著者 | Takashima, H, Mimura, N, Ohkubo, T, Yoshida, T, Tamaoki, H, Kobayashi, Y. | 登録日 | 2003-12-03 | 公開日 | 2004-03-16 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Distributed Computing and NMR Constraint-Based High-Resolution Structure
Determination: Applied for Bioactive Peptide Endothelin-1 To Determine C-Terminal
Folding J.Am.Chem.Soc., 126, 2004
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1VA3
| Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3) | 分子名称: | Transcription factor Sp1, ZINC ION | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | 登録日 | 2004-02-07 | 公開日 | 2005-02-08 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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1VA1
| Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 1) | 分子名称: | Transcription factor Sp1, ZINC ION | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | 登録日 | 2004-02-07 | 公開日 | 2005-02-08 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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3B2C
| Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3 | 分子名称: | Collagen-like peptide | 著者 | Motooka, D, Kawahara, K, Nakamura, S, Doi, M, Nishi, Y, Nishiuchi, Y, Nakazawa, T, Yoshida, T, Ohkubo, T, Kobayashi, Y, Kang, Y.K, Uchiyama, S. | 登録日 | 2011-07-26 | 公開日 | 2012-04-04 | 実験手法 | X-RAY DIFFRACTION (1.36 Å) | 主引用文献 | The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units Biopolymers, 98, 2011
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6A3L
| Crystal structure of cytochrome c' from Shewanella violacea DSS12 | 分子名称: | Cytochrome c, HEME C | 著者 | Suka, A, Oki, H, Kato, Y, Kawahara, K, Ohkubo, T, Maruno, T, Kobayashi, Y, Fujii, S, Wakai, S, Sambongi, Y. | 登録日 | 2018-06-15 | 公開日 | 2019-06-12 | 最終更新日 | 2019-10-02 | 実験手法 | X-RAY DIFFRACTION (2.14 Å) | 主引用文献 | Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure. Extremophiles, 23, 2019
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6A3K
| Crystal structure of cytochrome c' from Shewanella benthica DB6705 | 分子名称: | Cytochrome c, HEME C, PENTAETHYLENE GLYCOL | 著者 | Suka, A, Oki, H, Kato, Y, Kawahara, K, Ohkubo, T, Maruno, T, Kobayashi, Y, Fujii, S, Wakai, S, Sambongi, Y. | 登録日 | 2018-06-15 | 公開日 | 2019-06-12 | 最終更新日 | 2019-10-02 | 実験手法 | X-RAY DIFFRACTION (1.71 Å) | 主引用文献 | Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure. Extremophiles, 23, 2019
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2RQP
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6KQ1
| Crystal structure of cytochrome c551 from Pseudomonas sp. strain MT-1. | 分子名称: | Cytochrome C biogenesis protein CcsA, HEME C, ZINC ION | 著者 | Fujii, S, Oki, H, Kawahara, K, Ohkubo, T, Masanari-Fujii, M, Wakai, S, Sambongi, Y. | 登録日 | 2019-08-16 | 公開日 | 2020-08-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.57 Å) | 主引用文献 | Structural insights into high stability of cytochrome c551 from a deep-sea piezo-tolerant bacterium, Pseudomonas sp. strain MT-1 To Be Published
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2ZXY
| Crystal Structure of Cytochrome c555 from Aquifex aeolicus | 分子名称: | Cytochrome c552, HEME C | 著者 | Obuchi, M, Kawahara, K, Motooka, D, Nakamura, S, Yamanaka, M, Takeda, T, Uchiyama, S, Kobayashi, Y, Ohkubo, T, Sambongi, Y. | 登録日 | 2009-01-09 | 公開日 | 2009-08-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | 主引用文献 | Hyperstability and crystal structure of cytochrome c(555) from hyperthermophilic Aquifex aeolicus Acta Crystallogr.,Sect.D, 65, 2009
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1WKI
| solution structure of ribosomal protein L16 from thermus thermophilus HB8 | 分子名称: | LSU ribosomal protein L16P | 著者 | Nishimura, M, Yoshida, T, Shirouzu, M, Terada, T, Kuramitsu, S, Yokoyama, S, Ohkubo, T, Kobayashi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-05-31 | 公開日 | 2004-12-14 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of Ribosomal Protein L16 from Thermus thermophilus HB8 J.Mol.Biol., 344, 2004
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1Y1B
| Solution structure of Anemonia elastase inhibitor | 分子名称: | Elastase inhibitor | 著者 | Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y. | 登録日 | 2004-11-18 | 公開日 | 2005-07-19 | 最終更新日 | 2022-03-02 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata Biochemistry, 44, 2005
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1Y1C
| Solution structure of Anemonia elastase inhibitor analogue | 分子名称: | Elastase inhibitor | 著者 | Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y. | 登録日 | 2004-11-18 | 公開日 | 2005-07-19 | 最終更新日 | 2021-11-10 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata Biochemistry, 44, 2005
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1GCF
| NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, 12 STRUCTURES | 分子名称: | GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR | 著者 | Yamasaki, K, Naito, S, Anaguchi, H, Ohkubo, T, Ota, Y. | 登録日 | 1997-04-10 | 公開日 | 1997-10-22 | 最終更新日 | 2018-03-14 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of an extracellular domain containing the WSxWS motif of the granulocyte colony-stimulating factor receptor and its interaction with ligand. Nat.Struct.Biol., 4, 1997
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1WZB
| Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3 | 分子名称: | Collagen triple helix | 著者 | Kawahara, K, Nakamura, S, Nishi, Y, Uchiyama, S, Nishiuchi, Y, Nakazawa, T, Ohkubo, T, Kobayashi, Y. | 登録日 | 2005-03-03 | 公開日 | 2006-01-31 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10 Biochemistry, 44, 2005
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1WPK
| Methylated Form of N-terminal Transcriptional Regulator Domain of Escherichia Coli Ada Protein | 分子名称: | ADA regulatory protein, ZINC ION | 著者 | Takinowaki, H, Matsuda, Y, Yoshida, T, Kobayashi, Y, Ohkubo, T. | 登録日 | 2004-09-07 | 公開日 | 2005-09-13 | 最終更新日 | 2022-03-02 | 実験手法 | SOLUTION NMR | 主引用文献 | The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein Protein Sci., 15, 2006
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