Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5N4E
DownloadVisualize
BU of 5n4e by Molmil
Prolyl oligopeptidase B from Galerina marginata bound to 35mer hydrolysis and macrocyclization substrate - H698A mutant
分子名称: Alpha-amanitin proprotein, GLYCEROL, Prolyl oligopeptidase
著者Czekster, C.M, McMahon, S.A, Ludewig, H, Naismith, J.H.
登録日2017-02-10
公開日2017-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Characterization of a dual function macrocyclase enables design and use of efficient macrocyclization substrates.
Nat Commun, 8, 2017
5NC3
DownloadVisualize
BU of 5nc3 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) from Pseudomonas aeruginosa in complex with the tris-catechol vector
分子名称: FE (III) ION, Ferric enterobactin receptor, ~{N}-[2-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-3-(prop-2-ynylamino)propyl]amino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide
著者Moynie, L, Naismith, J.H.
登録日2017-03-03
公開日2018-03-21
最終更新日2022-08-17
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
5NJN
DownloadVisualize
BU of 5njn by Molmil
Roll out the beta-barrel: structure and mechanism of Pac13, a unique nucleoside dehydratase
分子名称: Putative cupin_2 domain-containing isomerase
著者Michailidou, F, Bent, A.F, Naismith, J.H, Goss, R.J.M.
登録日2017-03-29
公開日2018-03-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Pac13 is a Small, Monomeric Dehydratase that Mediates the Formation of the 3'-Deoxy Nucleoside of Pacidamycins.
Angew. Chem. Int. Ed. Engl., 56, 2017
5N0W
DownloadVisualize
BU of 5n0w by Molmil
Crystal structure of OphA-DeltaC6 mutant R72A in complex with SAM
分子名称: GLYCEROL, Peptide N-methyltransferase, S-ADENOSYLMETHIONINE
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
2BI8
DownloadVisualize
BU of 2bi8 by Molmil
udp-galactopyranose mutase from Klebsiella pneumoniae with reduced FAD
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, UDP-GALACTOPYRANOSE MUTASE
著者Beis, K, Srikannathasan, V, Naismith, J.H.
登録日2005-01-20
公開日2005-05-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal Structures of Mycobacteria Tuberculosis and Klebsiella Pneumoniae Udp-Galactopyranose Mutase in the Oxidised State and Klebsiella Pneumoniae Udp-Galactopyranose Mutase in the (Active) Reduced State.
J.Mol.Biol., 348, 2005
6Q5E
DownloadVisualize
BU of 6q5e by Molmil
Crystal structure of the ferric enterobactin receptor from Pseudomonas aeruginosa (PfeA) in complex with enterobactin
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, FE (III) ION, Ferric enterobactin receptor, ...
著者Moynie, L, Naismith, J.H.
登録日2018-12-07
公開日2019-01-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The complex of ferric-enterobactin with its transporter from Pseudomonas aeruginosa suggests a two-site model.
Nat Commun, 10, 2019
6QGM
DownloadVisualize
BU of 6qgm by Molmil
VirX1 apo structure
分子名称: VirX1
著者Gkotsi, D.S, Ludewig, H, Sharma, S.V, Unsworth, W.P, Taylor, R.J.K, McLachlan, M.M.W, Shanahan, S, Naismith, J.H, Goss, R.J.M.
登録日2019-01-11
公開日2019-10-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A marine viral halogenase that iodinates diverse substrates.
Nat.Chem., 11, 2019
6R00
DownloadVisualize
BU of 6r00 by Molmil
OphA DeltaC6 V404F complex with SAH
分子名称: PHE-PRO-TRP-MVA-ILE-MVA-PHE-GLY-VAL-ILE-GLY-VAL-ILE-GLY, Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Song, H, Naismith, J.H.
登録日2019-03-12
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
6QZY
DownloadVisualize
BU of 6qzy by Molmil
full length OphA V406P in complex with SAH
分子名称: ASN-GLY-PHE-PRO-TRP-MVA-ILE-MVA-VAL-GLY-PRO-ILE-GLY, MAGNESIUM ION, Peptide N-methyltransferase, ...
著者Song, H, Naismith, J.H.
登録日2019-03-12
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
6QZZ
DownloadVisualize
BU of 6qzz by Molmil
full length OphA V404E in complex with SAH
分子名称: Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Song, H, Naismith, J.H.
登録日2019-03-12
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
6R1F
DownloadVisualize
BU of 6r1f by Molmil
Crystal structure of the ferric enterobactin receptor mutant R480A from Pseudomonas aeruginosa (PfeA) in complex with enterobactin
分子名称: FE (III) ION, Ferric enterobactin receptor, N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)
著者Moynie, L, Naismith, J.H.
登録日2019-03-14
公開日2019-04-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献The complex of ferric-enterobactin with its transporter from Pseudomonas aeruginosa suggests a two-site model.
Nat Commun, 10, 2019
1I8T
DownloadVisualize
BU of 1i8t by Molmil
STRUCTURE OF UDP-GALACTOPYRANOSE MUTASE FROM E.COLI
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, UDP-GALACTOPYRANOSE MUTASE
著者Sanders, D.A.R, Staines, A.G, McMahon, S.A, McNeil, M.R, Whitfield, C, Naismith, J.H.
登録日2001-03-16
公開日2001-10-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献UDP-galactopyranose mutase has a novel structure and mechanism.
Nat.Struct.Biol., 8, 2001
8OYU
DownloadVisualize
BU of 8oyu by Molmil
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, H6 nanobody, ...
著者Weckener, M, Naismith, J.H, Owens, R.J.
登録日2023-05-05
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Trimeric nanobodies potently neutralize Omicron variants of SARS-CoV-2
To Be Published
5NC8
DownloadVisualize
BU of 5nc8 by Molmil
Shewanella denitrificans Kef CTD in AMP bound form
分子名称: ADENOSINE MONOPHOSPHATE, Potassium efflux system protein
著者Pliotas, C, Naismith, J.H.
登録日2017-03-03
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Adenosine Monophosphate Binding Stabilizes the KTN Domain of the Shewanella denitrificans Kef Potassium Efflux System.
Biochemistry, 56, 2017
5NEC
DownloadVisualize
BU of 5nec by Molmil
Crystal structure of the siderophore receptor PiuD from Pseudomonas aeruginosa
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, TonB-dependent siderophore receptor
著者Moynie, L, Naismith, J.H.
登録日2017-03-10
公開日2018-02-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献TonB-Dependent Receptor Repertoire of Pseudomonas aeruginosa for Uptake of Siderophore-Drug Conjugates.
Antimicrob. Agents Chemother., 62, 2018
5N0N
DownloadVisualize
BU of 5n0n by Molmil
Crystal structure of OphA-DeltaC6 mutant Y63F in complex with SAM
分子名称: MAGNESIUM ION, Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
5N0U
DownloadVisualize
BU of 5n0u by Molmil
Crystal structure of OphA-DeltaC6 mutant R72A in complex with SAH
分子名称: MAGNESIUM ION, Peptide N-Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
5N0X
DownloadVisualize
BU of 5n0x by Molmil
Crystal structure of OphA-DeltaC6 in complex with SAM
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Peptide N-Methyltransferase, ...
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
5N4C
DownloadVisualize
BU of 5n4c by Molmil
Prolyl oligopeptidase B from Galerina marginata bound to 35mer hydrolysis and macrocyclization substrate - S577A mutant
分子名称: Alpha-amanitin proprotein, GLYCEROL, Prolyl oligopeptidase
著者Czekster, C.M, McMahon, S.A, Ludewig, H, Naismith, J.H.
登録日2017-02-10
公開日2017-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Characterization of a dual function macrocyclase enables design and use of efficient macrocyclization substrates.
Nat Commun, 8, 2017
5N0T
DownloadVisualize
BU of 5n0t by Molmil
Crystal structure of OphA-DeltaC6 mutant Y76F in complex with SAM
分子名称: Peptide N-methyltransferase, S-ADENOSYLMETHIONINE
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
5N0S
DownloadVisualize
BU of 5n0s by Molmil
Crystal structure of OphA-DeltaC6 mutant Y98A in complex with SAM
分子名称: MALONATE ION, Peptide N-methyltransferase, S-ADENOSYLMETHIONINE
著者Song, H, Naismith, J.H.
登録日2017-02-03
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
5N4D
DownloadVisualize
BU of 5n4d by Molmil
Prolyl oligopeptidase B from Galerina marginata bound to 25mer macrocyclization substrate - D661A mutant
分子名称: Alpha-amanitin proprotein, GLYCEROL, Prolyl oligopeptidase
著者Czekster, C.M, McMahon, S.A, Ludewig, H, Naismith, J.H.
登録日2017-02-10
公開日2017-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Characterization of a dual function macrocyclase enables design and use of efficient macrocyclization substrates.
Nat Commun, 8, 2017
5NJO
DownloadVisualize
BU of 5njo by Molmil
Roll out the beta-barrel: structure and mechanism of Pac13, a unique nucleoside dehydratase
分子名称: Putative cupin_2 domain-containing isomerase
著者Michailidou, F, Bent, A.F, Naismith, J.H, Goss, R.J.M.
登録日2017-03-29
公開日2018-03-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Pac13 is a Small, Monomeric Dehydratase that Mediates the Formation of the 3'-Deoxy Nucleoside of Pacidamycins.
Angew. Chem. Int. Ed. Engl., 56, 2017
5N4F
DownloadVisualize
BU of 5n4f by Molmil
Prolyl oligopeptidase B from Galerina marginata - apo protein
分子名称: GLYCEROL, Prolyl oligopeptidase
著者Czekster, C.M, McMahon, S.A, Ludewig, H, Naismith, J.H.
登録日2017-02-10
公開日2017-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Characterization of a dual function macrocyclase enables design and use of efficient macrocyclization substrates.
Nat Commun, 8, 2017
5NR2
DownloadVisualize
BU of 5nr2 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) from Pseudomonas aeruginosa in complex with azotochelin
分子名称: 1,2-ETHANEDIOL, Azotochelin, FE (III) ION, ...
著者Moynie, L, Naismith, J.H.
登録日2017-04-21
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.78 Å)
主引用文献The complex of ferric-enterobactin with its transporter from Pseudomonas aeruginosa suggests a two-site model.
Nat Commun, 10, 2019

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon