6SSD
| Transaminase with PLP bound | 分子名称: | ForI-PLP, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | 著者 | Naismith, J.H, Gao, S. | 登録日 | 2019-09-06 | 公開日 | 2020-01-15 | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | 主引用文献 | PMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis. Chem.Commun.(Camb.), 55, 2019
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6TM4
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1QGL
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6YQQ
| ForT-PRPP complex | 分子名称: | 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, ForT-PRPP complex, ... | 著者 | Naismith, J.H, Gao, S. | 登録日 | 2020-04-18 | 公開日 | 2020-05-20 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex. Chem.Commun.(Camb.), 56, 2020
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6Y47
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6Z3C
| High resolution structure of RgNanOx | 分子名称: | CITRATE ANION, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Naismith, J.H, Lee, M.O. | 登録日 | 2020-05-19 | 公開日 | 2020-06-03 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | 主引用文献 | Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria. J.Biol.Chem., 295, 2020
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7BK9
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7BIS
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6Z33
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6Z3B
| Low resolution structure of RgNanOx | 分子名称: | CITRIC ACID, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Naismith, J.H, Lee, M. | 登録日 | 2020-05-19 | 公開日 | 2020-07-22 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.58 Å) | 主引用文献 | Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria. J.Biol.Chem., 295, 2020
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6Z2N
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6YY5
| Crystal structure of the ferric enterobactin receptor (PfeA) in complex with TCV_L5 | 分子名称: | FE (III) ION, Ferric enterobactin receptor, ~{N}-[2-[[(2~{S})-3-[[(2~{S})-3-[[1-[2-[2-[2-[4-[4-[5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazin-1-yl]-2-oxidanylidene-ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methylamino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide | 著者 | Naismith, J.H, Moynie, L.M. | 登録日 | 2020-05-04 | 公開日 | 2020-07-29 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.717 Å) | 主引用文献 | Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa. Acs Infect Dis., 2022
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6ZHD
| H11-H4 bound to Spike | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody H11-H4, ... | 著者 | Clare, D.K, Naismith, J.H, Weckener, M, Vogirala, V.K. | 登録日 | 2020-06-22 | 公開日 | 2020-07-29 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | H11-H4 bound to Spike To Be Published
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6ZH9
| Ternary complex CR3022 H11-H4 and RBD (SARS-CoV-2) | 分子名称: | CR3022 Light chain, CR3022 heavy, Nanobody H11-H4, ... | 著者 | Naismith, J.H, Mikolajek, H, Le Bas, A. | 登録日 | 2020-06-21 | 公開日 | 2020-09-02 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (3.31 Å) | 主引用文献 | Neutralizing nanobodies bind SARS-CoV-2 spike RBD and block interaction with ACE2. Nat.Struct.Mol.Biol., 27, 2020
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1FQ0
| KDPG ALDOLASE FROM ESCHERICHIA COLI | 分子名称: | CITRIC ACID, KDPG ALDOLASE | 著者 | Naismith, J.H. | 登録日 | 2000-09-01 | 公開日 | 2000-10-04 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Directed evolution of a new catalytic site in 2-keto-3-deoxy-6-phosphogluconate aldolase from Escherichia coli. Structure, 9, 2001
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1FWR
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5H8C
| Truncated XPD | 分子名称: | IRON/SULFUR CLUSTER, XPD/Rad3 related DNA helicase | 著者 | Naismith, J.H, Constantinescu, D. | 登録日 | 2015-12-23 | 公開日 | 2016-01-13 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | Mechanism of DNA loading by the DNA repair helicase XPD. Nucleic Acids Res., 44, 2016
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5H8W
| XPD mechanism | 分子名称: | ATP-dependent DNA helicase Ta0057, DNA (5'-D(P*TP*AP*CP*GP*A)-3'), IRON/SULFUR CLUSTER, ... | 著者 | Naismith, J.H, Constantinescu, D. | 登録日 | 2015-12-24 | 公開日 | 2016-01-13 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Mechanism of DNA loading by the DNA repair helicase XPD. Nucleic Acids Res., 44, 2016
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2XUV
| The structure of HdeB | 分子名称: | HDEB, SULFATE ION | 著者 | Naismith, J.H, Wang, W. | 登録日 | 2010-10-21 | 公開日 | 2011-08-24 | 最終更新日 | 2012-01-25 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Salt Bridges Regulate Both Dimer Formation and Monomeric Flexibility in Hdeb and May Have a Role in Periplasmic Chaperone Function. J.Mol.Biol., 415, 2012
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2V7I
| PrnB native | 分子名称: | PRNB, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | 著者 | Naismith, J.H. | 登録日 | 2007-07-30 | 公開日 | 2007-08-07 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | The Second Enzyme in Pyrrolnitrin Biosynthetic Pathway is Related to the Heme-Dependent Dioxygenase Superfamily Biochemistry, 46, 2007
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2VL7
| Structure of S. tokodaii Xpd4 | 分子名称: | PHOSPHATE ION, XPD | 著者 | Naismith, J.H, Johnson, K.A, Oke, M, McMahon, S.A, Liu, L, White, M.F, Zawadski, M, Carter, L.G. | 登録日 | 2008-01-08 | 公開日 | 2008-05-13 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Structure of the DNA Repair Helicase Xpd. Cell(Cambridge,Mass.), 133, 2008
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2VG0
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2V81
| Native KDPGal structure | 分子名称: | 2-DEHYDRO-3-DEOXY-6-PHOSPHOGALACTONATE ALDOLASE | 著者 | Naismith, J.H. | 登録日 | 2007-08-02 | 公開日 | 2007-08-14 | 最終更新日 | 2018-03-28 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Characterization and crystal structure of Escherichia coli KDPGal aldolase. Bioorg. Med. Chem., 16, 2008
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2VG2
| Rv2361 with IPP | 分子名称: | 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, CHLORIDE ION, DIPHOSPHATE, ... | 著者 | Naismith, J.H, Wang, W, Dong, C. | 登録日 | 2007-11-07 | 公開日 | 2007-11-13 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | The structural basis of chain length control in Rv1086. J. Mol. Biol., 381, 2008
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2VG3
| Rv2361 with citronellyl pyrophosphate | 分子名称: | CHLORIDE ION, GERANYL DIPHOSPHATE, GLYCEROL, ... | 著者 | Naismith, J.H, Wang, W, Dong, C. | 登録日 | 2007-11-08 | 公開日 | 2008-05-06 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The structural basis of chain length control in Rv1086. J. Mol. Biol., 381, 2008
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