2ZAC
| Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | 分子名称: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-10-02 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2Z8R
| Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-09-10 | 公開日 | 2007-10-16 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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2Z9V
| Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxamine | 分子名称: | 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Aspartate aminotransferase, GLYCEROL, ... | 著者 | Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T. | 登録日 | 2007-09-26 | 公開日 | 2007-11-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem., 283, 2008
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2ZAA
| Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG) | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-10-02 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2Z8S
| Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | 分子名称: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-09-10 | 公開日 | 2007-10-16 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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2ZBM
| Crystal Structure of I115M Mutant Cold-Active Protein Tyrosine Phosphatase | 分子名称: | Protein-tyrosine-phosphatase, ZINC ION | 著者 | Tsuruta, H, Mikami, B, Yamamoto, C, Yamagata, H. | 登録日 | 2007-10-24 | 公開日 | 2008-07-29 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase Febs J., 275, 2008
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3A68
| Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin | 分子名称: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | 著者 | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | 登録日 | 2009-08-26 | 公開日 | 2009-12-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem., 285, 2010
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2ZYC
| Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | 分子名称: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | 著者 | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2009-01-19 | 公開日 | 2009-02-03 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | 主引用文献 | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ Biochem.Biophys.Res.Commun., 381, 2009
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3A0N
| Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus | 分子名称: | VAL-1, beta-D-glucopyranuronic acid | 著者 | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2009-03-23 | 公開日 | 2009-10-20 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem., 284, 2009
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3A09
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3A56
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2ZA9
| Crystal Structure of Alginate lyase A1-II' N141C/N199C | 分子名称: | Alginate lyase, SULFATE ION | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-10-02 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2Z9U
| Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti at 2.0 A resolution | 分子名称: | Aspartate aminotransferase, GLYCEROL, SULFATE ION | 著者 | Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T. | 登録日 | 2007-09-26 | 公開日 | 2007-11-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem., 283, 2008
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2ZUX
| Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2008-10-28 | 公開日 | 2009-02-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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2Z42
| Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | 分子名称: | Alginate lyase, SULFATE ION | 著者 | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2007-06-12 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1 To be published
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2ZUY
| Crystal structure of exotype rhamnogalacturonan lyase YesX | 分子名称: | CALCIUM ION, YesX protein | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2008-10-28 | 公開日 | 2009-02-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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3AFM
| Crystal structure of aldose reductase A1-R responsible for alginate metabolism | 分子名称: | Carbonyl reductase | 著者 | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-03-10 | 公開日 | 2010-08-11 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1 Biochim.Biophys.Acta, 1804, 2010
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3A9Q
| Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4 | 分子名称: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | 著者 | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | 登録日 | 2009-11-05 | 公開日 | 2009-12-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.896 Å) | 主引用文献 | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem., 285, 2010
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3ANK
| Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | 分子名称: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-09-02 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem., 286, 2011
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3AFL
| Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | 著者 | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-03-09 | 公開日 | 2010-04-28 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | 主引用文献 | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens J.Biol.Chem., 285, 2010
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3AJP
| Crystal structure of human H ferritin E140A mutant | 分子名称: | Ferritin heavy chain, MAGNESIUM ION | 著者 | Masuda, T, Mikami, B. | 登録日 | 2010-06-11 | 公開日 | 2010-08-25 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.901 Å) | 主引用文献 | The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site Biochem.Biophys.Res.Commun., 400, 2010
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3ALD
| Crystal structure of sweet-tasting protein Thaumatin I at 1.10 A | 分子名称: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | 著者 | Masuda, T, Mikami, B, Kitabatake, N. | 登録日 | 2010-07-29 | 公開日 | 2011-06-08 | 最終更新日 | 2011-11-02 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | High-resolution structure of the recombinant sweet-tasting protein thaumatin I Acta Crystallogr.,Sect.F, 67, 2011
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3AMI
| The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 | 分子名称: | zinc peptidase | 著者 | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-08-20 | 公開日 | 2011-02-02 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol., 407, 2011
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3ANJ
| Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae | 分子名称: | Putative uncharacterized protein gbs1889 | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-09-02 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem., 286, 2011
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3AJ3
| Crystal structure of selenomethionine substituted 4-pyridoxolactonase from Mesorhizobium loti | 分子名称: | 4-pyridoxolactonase, PHOSPHATE ION, ZINC ION | 著者 | Kobayashi, J, Yoshikane, Y, Baba, S, Mikami, B, Yagi, T. | 登録日 | 2010-05-21 | 公開日 | 2011-05-25 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.577 Å) | 主引用文献 | Structure of 4-pyridoxolactonase from Mesorhizobium loti. Acta Crystallogr.,Sect.F, 70, 2014
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