3WG2
| Crystal structure of Agrocybe cylindracea galectin mutant (N46A) | 分子名称: | Galactoside-binding lectin, TRIETHYLENE GLYCOL | 著者 | Kuwabara, N, Hu, D, Tateno, H, Makio, H, Hirabayashi, J, Kato, R. | 登録日 | 2013-07-25 | 公開日 | 2013-11-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett., 587, 2013
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3WAO
| Crystal structure of Atg13 LIR-fused human LC3B_2-119 | 分子名称: | Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3B | 著者 | Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S. | 登録日 | 2013-05-06 | 公開日 | 2013-12-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism. Structure, 22, 2014
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3WLU
| Crystal Structure of human galectin-9 NCRD with Selenolactose | 分子名称: | 2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside, Galectin-9 | 著者 | Makyio, H, Suzuki, T, Ando, H, Yamada, Y, Ishida, H, Kiso, M, Wakatsuki, S, Kato, R. | 登録日 | 2013-11-14 | 公開日 | 2014-11-05 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Expanded potential of seleno-carbohydrates as a molecular tool for X-ray structural determination of a carbohydrate-protein complex with single/multi-wavelength anomalous dispersion phasing Bioorg.Med.Chem., 22, 2014
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3WAN
| Crystal structure of Atg13 LIR-fused human LC3A_2-121 | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3A | 著者 | Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S. | 登録日 | 2013-05-06 | 公開日 | 2013-12-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | 主引用文献 | Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism. Structure, 22, 2014
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3WD7
| Type III polyketide synthase | 分子名称: | COENZYME A, NICKEL (II) ION, SULFATE ION, ... | 著者 | Mori, T, Shimokawa, Y, Matsui, T, Kato, R, Sugio, S, Morita, H, Abe, I. | 登録日 | 2013-06-10 | 公開日 | 2013-09-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Cloning, characterization, and crystal structure analysis of novel type III polyketide synthases from Citrus microcarpa To be Published
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3WG4
| Crystal structure of Agrocybe cylindracea galectin mutant (N46A) with blood type A antigen tetraose | 分子名称: | DI(HYDROXYETHYL)ETHER, Galactoside-binding lectin, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 著者 | Kuwabara, N, Hu, D, Tateno, H, Makio, H, Hirabayashi, J, Kato, R. | 登録日 | 2013-07-25 | 公開日 | 2013-11-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett., 587, 2013
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3WAM
| Crystal structure of human LC3C_8-125 | 分子名称: | CITRIC ACID, Microtubule-associated proteins 1A/1B light chain 3C | 著者 | Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S. | 登録日 | 2013-05-06 | 公開日 | 2013-12-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism. Structure, 22, 2014
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3WG3
| Crystal structure of Agrocybe cylindracea galectin with blood type A antigen tetraose | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Galactoside-binding lectin, ... | 著者 | Kuwabara, N, Hu, D, Tateno, H, Makio, H, Hirabayashi, J, Kato, R. | 登録日 | 2013-07-25 | 公開日 | 2013-11-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett., 587, 2013
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3WAP
| Crystal structure of Atg13 LIR-fused human LC3C_8-125 | 分子名称: | Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3C | 著者 | Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S. | 登録日 | 2013-05-06 | 公開日 | 2013-12-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism. Structure, 22, 2014
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8ABT
| Crystal structure of NaLdpA in complex with the product analog Resveratrol | 分子名称: | RESVERATROL, SULFATE ION, SnoaL-like domain-containing protein | 著者 | Zahn, M, Kuatsjah, E, Beckham, G.T, McGeehan, J.E. | 登録日 | 2022-07-04 | 公開日 | 2023-02-01 | 実験手法 | X-RAY DIFFRACTION (1.39 Å) | 主引用文献 | Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc.Natl.Acad.Sci.USA, 120, 2023
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8ABU
| Crystal structure of NaLdpA mutant H97Q in complex with erythro-DGPD | 分子名称: | (1S,2R)-1,2-bis(3-methoxy-4-oxidanyl-phenyl)propane-1,3-diol, SnoaL-like domain-containing protein | 著者 | Zahn, M, Kuatsjah, E, Beckham, G.T, McGeehan, J.E. | 登録日 | 2022-07-04 | 公開日 | 2023-02-01 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.661 Å) | 主引用文献 | Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc.Natl.Acad.Sci.USA, 120, 2023
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8ABV
| Crystal structure of SpLdpA in complex with erythro-DGPD | 分子名称: | (1R,2S)-1,2-bis(3-methoxy-4-oxidanyl-phenyl)propane-1,3-diol, (1S,2R)-1,2-bis(3-methoxy-4-oxidanyl-phenyl)propane-1,3-diol, GLYCEROL, ... | 著者 | Zahn, M, Kuatsjah, E, Beckham, G.T, McGeehan, J.E. | 登録日 | 2022-07-04 | 公開日 | 2023-02-01 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.683 Å) | 主引用文献 | Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc.Natl.Acad.Sci.USA, 120, 2023
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8ABW
| Crystal structure of SpLdpA in complex with threo-DGPD | 分子名称: | (1R,2R)-1,2-bis(3-methoxy-4-oxidanyl-phenyl)propane-1,3-diol, (1S,2S)-1,2-bis(3-methoxy-4-oxidanyl-phenyl)propane-1,3-diol, SULFATE ION, ... | 著者 | Zahn, M, Kuatsjah, E, Beckham, G.T, McGeehan, J.E. | 登録日 | 2022-07-04 | 公開日 | 2023-02-01 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.83 Å) | 主引用文献 | Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc.Natl.Acad.Sci.USA, 120, 2023
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1GC3
| THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH TRYPTOPHAN | 分子名称: | ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, TRYPTOPHAN | 著者 | Ura, H, Nakai, T, Hirotsu, K, Kuramitsu, S. | 登録日 | 2000-07-18 | 公開日 | 2001-09-05 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Substrate recognition mechanism of thermophilic dual-substrate enzyme. J.Biochem., 130, 2001
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1GC4
| THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH ASPARTATE | 分子名称: | ASPARTATE AMINOTRANSFERASE, ASPARTIC ACID, PYRIDOXAL-5'-PHOSPHATE | 著者 | Ura, H, Nakai, T, Hirotsu, K, Kuramitsu, S. | 登録日 | 2000-07-19 | 公開日 | 2001-09-05 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Substrate recognition mechanism of thermophilic dual-substrate enzyme. J.Biochem., 130, 2001
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1GCK
| THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1 COMPLEXED WITH ASPARTATE | 分子名称: | ASPARTATE AMINOTRANSFERASE, ASPARTIC ACID, PYRIDOXAL-5'-PHOSPHATE | 著者 | Ura, H, Nakai, T, Hirotsu, K, Kuramitsu, S. | 登録日 | 2000-08-04 | 公開日 | 2001-11-14 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Substrate recognition mechanism of thermophilic dual-substrate enzyme. J.Biochem., 130, 2001
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1BKG
| ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE | 分子名称: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ASPARTATE AMINOTRANSFERASE, MALEIC ACID | 著者 | Nakai, T, Okada, K, Kuramitsu, S, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 1998-07-07 | 公開日 | 1999-07-22 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate. Biochemistry, 38, 1999
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1BJW
| ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS | 分子名称: | ASPARTATE AMINOTRANSFERASE, PHOSPHATE ION | 著者 | Nakai, T, Okada, K, Kuramitsu, S, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 1998-06-30 | 公開日 | 1999-07-22 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate. Biochemistry, 38, 1999
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6KAM
| Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor | 分子名称: | 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, ... | 著者 | Kuwabara, N. | 登録日 | 2019-06-23 | 公開日 | 2020-01-15 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.46 Å) | 主引用文献 | Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun, 11, 2020
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4G01
| ARA7-GDP-Ca2+/VPS9a | 分子名称: | CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, Ras-related protein RABF2b, ... | 著者 | Ihara, K. | 登録日 | 2012-07-09 | 公開日 | 2013-02-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Direct metal recognition by guanine nucleotide-exchange factor in the initial step of the exchange reaction Acta Crystallogr.,Sect.D, 69, 2013
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5XFE
| Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns) | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ... | 著者 | Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T. | 登録日 | 2017-04-10 | 公開日 | 2017-08-30 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography IUCrJ, 4, 2017
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4WAA
| Crystal structure of Nix LIR-fused human LC3B_2-119 | 分子名称: | Microtubule-associated proteins 1A/1B light chain 3B | 著者 | Suzuki, H, Ravichandran, A.C, Dobson, R.C.J, Novak, I, Wakatsuki, S. | 登録日 | 2014-08-29 | 公開日 | 2015-09-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins. Sci Rep, 7, 2017
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4XKH
| CRYSTAL STRUCTURE OF THE AIRAPL TANDEM UIMS IN COMPLEX WITH A LYS48-LINKED TRI-UBIQUITIN | 分子名称: | AN1-type zinc finger protein 2B, Polyubiquitin-C | 著者 | Rahighi, S, Kawasaki, M, Stanhill, A, Wakatsuki, S. | 登録日 | 2015-01-11 | 公開日 | 2016-02-17 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains. Structure, 24, 2016
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6KAJ
| Crystal structure of FKRP in complex with Ba ion | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, CYTIDINE-5'-DIPHOSPHATE, ... | 著者 | Kuwabara, N. | 登録日 | 2019-06-23 | 公開日 | 2020-01-29 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.2249 Å) | 主引用文献 | Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun, 11, 2020
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6KAK
| Crystal structure of FKRP in complex with Mg ion | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ... | 著者 | Kuwabara, N. | 登録日 | 2019-06-23 | 公開日 | 2020-01-15 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.056 Å) | 主引用文献 | Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun, 11, 2020
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