Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5XCC
DownloadVisualize
BU of 5xcc by Molmil
X-ray structure of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
5XCB
DownloadVisualize
BU of 5xcb by Molmil
X-ray structure of domains D1 and D2 of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
5YFK
DownloadVisualize
BU of 5yfk by Molmil
X-ray structure of a mutant form C232S of Clostridium perfringens sortase B
Descriptor: Uncharacterized protein Sortase B
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-09-21
Release date:2017-10-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017
4KRU
DownloadVisualize
BU of 4kru by Molmil
X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
4KRT
DownloadVisualize
BU of 4krt by Molmil
X-ray structure of endolysin from clostridium perfringens phage phiSM101
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
5B23
DownloadVisualize
BU of 5b23 by Molmil
X-ray Structure of Clostridium Perfringens Sortase B
Descriptor: Uncharacterized protein Sortase B
Authors:Kamitori, S, Yoshida, H, Tamai, E.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017
7D6P
DownloadVisualize
BU of 7d6p by Molmil
X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.
Descriptor: GLYCEROL, SULFATE ION, Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
7D6T
DownloadVisualize
BU of 7d6t by Molmil
X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif.
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
8GSY
DownloadVisualize
BU of 8gsy by Molmil
X-ray structure of Clostridium perfringens pili protein B N-terminal domain
Descriptor: Peptidoglycan bound protein
Authors:Kamitori, S, Yamada, M, Tamai, E.
Deposit date:2022-09-07
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8GSX
DownloadVisualize
BU of 8gsx by Molmil
X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
Descriptor: ACETATE ION, pili protein
Authors:Kamitori, S, Yamada, M, Tamai, E.
Deposit date:2022-09-07
Release date:2023-06-07
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
7F5I
DownloadVisualize
BU of 7f5i by Molmil
X-ray structure of Clostridium perfringens-specific amidase endolysin
Descriptor: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
Authors:Kamitori, S, Tamai, E.
Deposit date:2021-06-22
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
7CFL
DownloadVisualize
BU of 7cfl by Molmil
X-ray structure of autolysin Acd24020 catalytic domain from Clostridium difficile
Descriptor: CITRATE ANION, Putative cell wall hydrolase phosphatase-associated protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-06-26
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme.
Mol.Microbiol., 115, 2021
3B4X
DownloadVisualize
BU of 3b4x by Molmil
Crystal Structure Analysis of Sulfolobus tokodaii strain7 cytochrom P450
Descriptor: 367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kamitori, S, Yoshida, H, Ohtaki, A, Nakamura, N.
Deposit date:2007-10-24
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner
To be Published
2D58
DownloadVisualize
BU of 2d58 by Molmil
Human microglia-specific protein Iba1
Descriptor: Allograft inflammatory factor 1, NICKEL (II) ION
Authors:Kamitori, S.
Deposit date:2005-10-31
Release date:2006-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding
J.Mol.Biol., 364, 2006
7WRR
DownloadVisualize
BU of 7wrr by Molmil
X-ray structure of Thermus thermophilus HB8 transketorase in complex with TPP and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Kamitori, S, Yoshihara, A.
Deposit date:2022-01-27
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
7WRT
DownloadVisualize
BU of 7wrt by Molmil
X-ray structure ofThermus thermophilus HB8 transketorase demonstrate in complex with TPP and D-erythrose-4-phosphate
Descriptor: CALCIUM ION, ERYTHOSE-4-PHOSPHATE, THIAMINE DIPHOSPHATE, ...
Authors:Kamitori, S, Yoshihara, A.
Deposit date:2022-01-27
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
3VKN
DownloadVisualize
BU of 3vkn by Molmil
Galectin-8 N-terminal domain in free form
Descriptor: CHLORIDE ION, Galectin-8
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKL
DownloadVisualize
BU of 3vkl by Molmil
Protease-resistant mutant form of human Galectin-8 in complex with two lactose molecules
Descriptor: 1,2-ETHANEDIOL, Galectin-8, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKO
DownloadVisualize
BU of 3vko by Molmil
Galectin-8 N-terminal domain in complex with sialyllactosamine
Descriptor: CHLORIDE ION, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3W0Y
DownloadVisualize
BU of 3w0y by Molmil
Crystal Structure Analysis of Vitamin D receptor
Descriptor: Vitamin D3 receptor, [3-fluoro-2'-methyl-4'-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)biphenyl-4-yl]acetic acid
Authors:Itoh, S, Iijima, S.
Deposit date:2012-11-05
Release date:2013-11-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure Analysis of Vitamin D receptor
TO BE PUBLISHED
3W0C
DownloadVisualize
BU of 3w0c by Molmil
Crystal Structure Analysis of Vitamin D receptor
Descriptor: (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid, Vitamin D3 receptor
Authors:Itoh, S, Iijima, S.
Deposit date:2012-10-29
Release date:2013-11-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:structure analysis of vitamin D receptor
To be Published
3W0A
DownloadVisualize
BU of 3w0a by Molmil
Crystal Structure Analysis of Vitamin D receptor
Descriptor: (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-yn-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid, Vitamin D3 receptor
Authors:Itoh, S, Iijima, S.
Deposit date:2012-10-25
Release date:2013-11-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:structure analysis of vitamin D3 receptor
To be Published
8JHE
DownloadVisualize
BU of 8jhe by Molmil
Hyper-thermostable ancestral L-amino acid oxidase 2 (HTAncLAAO2)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Hyper thermostable ancestral L-amino acid oxidase
Authors:Kawamura, Y, Ishida, C, Miyata, R, Miyata, A, Hayashi, S, Fujinami, D, Ito, S, Nakano, S.
Deposit date:2023-05-23
Release date:2023-10-04
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction.
Commun Chem, 6, 2023
7BXS
DownloadVisualize
BU of 7bxs by Molmil
2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator glycine binding form
Descriptor: 2-amino-3-ketobutyrate coenzyme A ligase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
Authors:Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S.
Deposit date:2020-04-20
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase
Commun Chem, 4, 2021
7BXQ
DownloadVisualize
BU of 7bxq by Molmil
2-amino-3-ketobutyrate CoA ligase from Cupriavidus necator L-Threonine binding form
Descriptor: 2-amino-3-ketobutyrate coenzyme A ligase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-allothreonine
Authors:Motoyama, T, Nakano, S, Hasebe, F, Miyoshi, N, Ito, S.
Deposit date:2020-04-20
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Chemoenzymatic synthesis of 3-ethyl-2,5-dimethylpyrazine by L-threonine 3-dehydrogenase and 2-amino-3-ketobutyrate CoA ligase/L-threonine aldolase
Commun Chem, 4, 2021

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon