Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2CF2
DownloadVisualize
BU of 2cf2 by Molmil
Architecture of mammalian fatty acid synthase
Descriptor: FATTY ACID SYNTHASE, DH DOMAIN, ER DOMAIN, ...
Authors:Maier, T, Jenni, S, Ban, N.
Deposit date:2006-02-14
Release date:2006-03-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Architecture of Mammalian Fatty Acid Synthase at 4.5 A Resolution.
Science, 311, 2006
2CJ9
DownloadVisualize
BU of 2cj9 by Molmil
Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with an analog of seryladenylate
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, CHLORIDE ION, SERYL-TRNA SYNTHETASE, ...
Authors:Bilokapic, S, Maier, T, Ahel, D, Gruic-Sovulj, I, Soll, D, Weygand-Durasevic, I, Ban, N.
Deposit date:2006-03-29
Release date:2006-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Unusual Seryl-tRNA Synthetase Reveals a Distinct Zinc-Dependent Mode of Substrate Recognition
Embo J., 25, 2006
2CJA
DownloadVisualize
BU of 2cja by Molmil
Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Bilokapic, S, Maier, T, Ahel, D, Gruic-Sovulj, I, Soll, D, Weygand-Durasevic, I, Ban, N.
Deposit date:2006-03-30
Release date:2006-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the Unusual Seryl-tRNA Synthetase Reveals a Distinct Zinc-Dependent Mode of Substrate Recognition
Embo J., 25, 2006
2CJB
DownloadVisualize
BU of 2cjb by Molmil
Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with serine
Descriptor: CHLORIDE ION, SERINE, SERYL-TRNA SYNTHETASE, ...
Authors:Bilokapic, S, Maier, T, Ahel, D, Gruic-Sovulj, I, Soll, D, Weygand-Durasevic, I, Ban, N.
Deposit date:2006-03-30
Release date:2006-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the Unusual Seryl-tRNA Synthetase Reveals a Distinct Zinc-Dependent Mode of Substrate Recognition
Embo J., 25, 2006
2CKY
DownloadVisualize
BU of 2cky by Molmil
Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand
Descriptor: MAGNESIUM ION, NUCLEIC ACID, OSMIUM ION, ...
Authors:Thore, S, Leibundgut, M, Ban, N.
Deposit date:2006-04-24
Release date:2006-05-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Eukaryotic Thiamine Pyrophosphate Riboswitch with its Regulatory Ligand.
Science, 312, 2006
2CIM
DownloadVisualize
BU of 2cim by Molmil
Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase
Descriptor: CHLORIDE ION, PLATINUM (II) ION, SERYL-TRNA SYNTHETASE, ...
Authors:Bilokapic, S, Maier, T, Ahel, D, Gruic-Sovulj, I, Soll, D, Weygand-Durasevic, I, Ban, N.
Deposit date:2006-03-24
Release date:2006-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the Unusual Seryl-tRNA Synthetase Reveals a Distinct Zinc-Dependent Mode of Substrate Recognition
Embo J., 25, 2006
3D2V
DownloadVisualize
BU of 3d2v by Molmil
Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate
Descriptor: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM, MAGNESIUM ION, TPP-specific riboswitch
Authors:Thore, S, Frick, C, Ban, N.
Deposit date:2008-05-09
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
J.Am.Chem.Soc., 130, 2008
3D2X
DownloadVisualize
BU of 3d2x by Molmil
Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate
Descriptor: 3-[(4-hydroxy-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, MAGNESIUM ION, TPP-specific riboswitch
Authors:Thore, S, Frick, C, Ban, N.
Deposit date:2008-05-09
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
J.Am.Chem.Soc., 130, 2008
4AC9
DownloadVisualize
BU of 4ac9 by Molmil
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH GDP
Descriptor: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Leibundgut, M, Frick, C, Thanbichler, M, Boeck, A, Ban, N.
Deposit date:2011-12-14
Release date:2012-08-22
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Selenocysteine tRNA-Specific Elongation Factor Selb is a Structural Chimaera of Elongation and Initiation Factors.
Embo J., 24, 2005
4ADV
DownloadVisualize
BU of 4adv by Molmil
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Descriptor: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Boehringer, D, O'Farrell, H.C, Rife, J.P, Ban, N.
Deposit date:2012-01-03
Release date:2012-02-15
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Structural Insights Into Methyltransferase Ksga Function in 30S Ribosomal Subunit Biogenesis
J.Biol.Chem., 287, 2012
4ADX
DownloadVisualize
BU of 4adx by Molmil
The Cryo-EM Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6
Descriptor: 23S Ribosomal RNA EXPANSION SEGMENTS, 23S ribosomal RNA, 5S Ribosomal RNA, ...
Authors:Greber, B.J, Boehringer, D, Godinic-Mikulcic, V, Crnkovic, A, Ibba, M, Weygand-Durasevic, I, Ban, N.
Deposit date:2012-01-04
Release date:2012-02-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Cryo-Em Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6 and Implications for Ribosome Evolution
J.Mol.Biol., 418, 2012
4A29
DownloadVisualize
BU of 4a29 by Molmil
Structure of the engineered retro-aldolase RA95.0
Descriptor: 1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE, D-MALATE, ENGINEERED RETRO-ALDOL ENZYME RA95.0
Authors:Giger, L, Caner, S, Kast, P, Baker, D, Ban, N, Hilvert, D.
Deposit date:2011-09-23
Release date:2012-11-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Evolution of a designed retro-aldolase leads to complete active site remodeling.
Nat.Chem.Biol., 9, 2013
4A2R
DownloadVisualize
BU of 4a2r by Molmil
Structure of the engineered retro-aldolase RA95.5-5
Descriptor: 1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE, INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE
Authors:Giger, L, Caner, S, Kast, P, Baker, D, Ban, N, Hilvert, D.
Deposit date:2011-09-28
Release date:2012-11-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Evolution of a designed retro-aldolase leads to complete active site remodeling.
Nat.Chem.Biol., 9, 2013
4A2S
DownloadVisualize
BU of 4a2s by Molmil
Structure of the engineered retro-aldolase RA95.5
Descriptor: 1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE, INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE
Authors:Giger, L, Caner, S, Kast, P, Baker, D, Ban, N, Hilvert, D.
Deposit date:2011-09-28
Release date:2012-11-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Evolution of a designed retro-aldolase leads to complete active site remodeling.
Nat.Chem.Biol., 9, 2013
4ACA
DownloadVisualize
BU of 4aca by Molmil
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
Descriptor: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, GUANOSINE-5'-MONOPHOSPHATE, SULFATE ION, ...
Authors:Leibundgut, M, Frick, C, Thanbichler, M, Boeck, A, Ban, N.
Deposit date:2011-12-14
Release date:2012-11-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Selenocysteine tRNA-Specific Elongation Factor Selb is a Structural Chimaera of Elongation and Initiation Factors.
Embo J., 24, 2005
4ACB
DownloadVisualize
BU of 4acb by Molmil
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH THE GTP ANALOGUE GPPNHP
Descriptor: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Leibundgut, M, Frick, C, Thanbichler, M, Boeck, A, Ban, N.
Deposit date:2011-12-14
Release date:2012-11-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Selenocysteine tRNA-Specific Elongation Factor Selb is a Structural Chimaera of Elongation and Initiation Factors.
Embo J., 24, 2005
4CE4
DownloadVisualize
BU of 4ce4 by Molmil
39S large subunit of the porcine mitochondrial ribosome
Descriptor: 16S Ribosomal RNA, ICT1, MRPL13, ...
Authors:Greber, B.J, Boehringer, D, Leitner, A, Bieri, P, Voigts-Hoffmann, F, Erzberger, J.P, Leibundgut, M, Aebersold, R, Ban, N.
Deposit date:2013-11-08
Release date:2013-12-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome.
Nature, 505, 2014
4BTS
DownloadVisualize
BU of 4bts by Molmil
THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Descriptor: 18S ribosomal RNA, 40S RIBOSOMAL PROTEIN RACK1, 40S RIBOSOMAL PROTEIN RPS10E, ...
Authors:Weisser, M, Voigts-Hoffmann, F, Rabl, J, Leibundgut, M, Ban, N.
Deposit date:2013-06-19
Release date:2013-07-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.703 Å)
Cite:The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A.
Nat. Struct. Mol. Biol., 20, 2013
4BSZ
DownloadVisualize
BU of 4bsz by Molmil
Crystal Structure of the Yeast Ribosomal Protein Rps3 in Complex with its Chaperone Yar1
Descriptor: 40S RIBOSOMAL PROTEIN S3, ANKYRIN REPEAT-CONTAINING PROTEIN YAR1
Authors:Holzer, S, Ban, N, Klinge, S.
Deposit date:2013-06-12
Release date:2013-09-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.842 Å)
Cite:Crystal Structure of the Yeast Ribosomal Protein Rps3 in Complex with its Chaperone Yar1
J.Mol.Biol., 425, 2013
3J8B
DownloadVisualize
BU of 3j8b by Molmil
Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map
Descriptor: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P, Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
3J8C
DownloadVisualize
BU of 3j8c by Molmil
Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map
Descriptor: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P, Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.6 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
5APN
DownloadVisualize
BU of 5apn by Molmil
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Greber, B.J, Gerhardy, S, Leitner, A, Leibundgut, M, Salem, M, Boehringer, D, Leulliot, N, Aebersold, R, Panse, V.G, Ban, V.
Deposit date:2015-09-17
Release date:2015-12-16
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Cell, 164, 2015
4V4V
DownloadVisualize
BU of 4v4v by Molmil
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal subunit protein S10, ...
Authors:Mitra, K, Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
4V4W
DownloadVisualize
BU of 4v4w by Molmil
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal subunit protein S10, ...
Authors:Mitra, K, Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
7A4J
DownloadVisualize
BU of 7a4j by Molmil
Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Descriptor: Antitermination protein N,6,7-dimethyl-8-ribityllumazine synthase,6,7-dimethyl-8-ribityllumazine synthase
Authors:Tetter, S, Hilvert, D.
Deposit date:2020-08-19
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.
Science, 372, 2021

220113

數據於2024-05-22公開中

PDB statisticsPDBj update infoContact PDBjnumon